Bordetella genomosp. 13: CAL15_16830
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Entry
CAL15_16830 CDS
T05441
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL15_16830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgm03019
]
CAL15_16830
03009 Ribosome biogenesis [BR:
bgm03009
]
CAL15_16830
Enzymes [BR:
bgm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CAL15_16830
Messenger RNA biogenesis [BR:
bgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAL15_16830
Ribosome biogenesis [BR:
bgm03009
]
Prokaryotic type
rRNA processing factors
CAL15_16830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ARP95895
UniProt:
A0A1W6ZF56
LinkDB
All DBs
Position
3759606..3762722
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIEIAGREQRKGNIYKGVITRIEPGLEACFVNY
GEERHGFLPFKEVARSYFKEGVDVRTARIQDALKEGQEIIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRSVEELQ
WDMAYLMQLWTAIDSAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVEVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEARTSFELAQAPATDLAWAPREQEAKAKPEALVKGITPSQPAPIST
PAPAPAVAPQPAPAATAGLGGWFKRLTNWLSGTTAAPAAAPAAEPQEETRRGTSGSSRGR
RGHDGQERRGERHGSDRNRGRRGEGRGEAGDAELGGNRRGGRRGEERTDRPQRPERERER
EAAAPVAAARPERAPAPAAEGDDAAAGTRRGRGRRGRGRREEGAPQGALSDQENMVAALA
ETVASALPAEQRATPANVPAEPRDKAVDLEDAEDVQADGVVAEGEGAEAGADPERKRRRR
RSRRGRRGADEASALAGEGQDGDALAQDAQEALQDVAAETEPASPASTEAPTYAAAVQAA
TPAPQAAAVQPSAPQAPVEPVVEAQPAVTAEPAQSEQAPAEPATPAAPWTAQPAAPVEQS
AAPTPVQAAEPAPVTETSAAEAPAPAEEPAPLAAPVQSAPAPAPAATMAPPAAPAAAPQP
PAAQAPISVAPAAPAATTQGLHAIVNAAGLTWVETDPERHAQTQQRIAASATPVRLGRER
KPVPPVSSAPLQQVETRR
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcaacgcaccaggaagaactgcgcgttgccatcgtcgat
gggcagaagctcatcgacctcgacatcgagatcgccggccgcgaacagcgcaaaggcaac
atctacaaaggcgtcatcacccgcatcgaacccggcctcgaggcctgcttcgtcaactac
ggcgaagaacgccacggcttcctgccgttcaaggaagtggcccgcagctacttcaaggaa
ggcgtcgacgtgcgcaccgcgcgcatccaggacgccctgaaggaaggccaggaaatcatc
gtccaggtcgagaaggaagaacgcggcaacaagggcgccgccctcaccacgttcatctcg
ctcgccggccgctatctggtcctgatgcccaacaacccccgcggcggcggcgtttcgcgc
cgtgtcgagggcgaagaccgccaggagctgcgcgacacgatggagcagctcgacgtgccg
caaggcatgagcatcatcgcgcgcaccgccggcatcggccgcagcgtcgaggaactgcaa
tgggacatggcgtacctgatgcagctgtggacggccatcgacagcgccgcccgcgacaac
gccgcgcccatcctgatctacctggagtccagcctggtcatccgggccatccgcgactac
ttctcgcctgaaatcggcgagatcctgatcgataccgacgagatcgccgaccaggccacc
gcgttcatgagcgtggtgatgccggacaacgtccagcgcgtgaagcgctatcgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcacc
gtgcagctgccctcgggcggcgccgtggtaatcgaccacaccgaggcgctggtggcggtg
gacgtcaactcggcgcgttcgacccgcggagccgacatcgaggaaaccgcgctgcgcacc
aacctggaagcggccgacgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagagggaaagaaccagcgcgcggtcgaacagcgc
ctgcgcgatgccctgcatttcgatcgcgcccgcgtgcagatgggcaagatctcgcgcttc
ggcctgatggagctgtcccgccagcgcctgcgtccggcccttaacgagggttcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgcggaatccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggagaacaccgcggcggtgcacgcccag
gtgcctgtggaagtggccactttcctgctgaacgaaaagcgcgccgacatcgccaagatg
gaagcccgcctgaaggtcaacctggtgctcattcccaacaagcacctggaaaccccgcac
caccacatcgagcgcctgcgccacgacgacccgcgtctggaagaggccaggaccagtttc
gaactggcccaggcccccgccaccgacttggcctgggcgccccgtgaacaggaagccaag
gccaagcccgaagccctggtcaagggcattacgccgtcgcaacctgcccccatttccacc
cccgctcccgcgcctgccgtcgcgccgcagcccgctccagcggccacggccggtctgggc
ggctggttcaagcgcctgacgaactggctcagcggcacgaccgccgcaccggccgccgcg
cccgccgccgaaccgcaggaagagacccgtcgcggcacctccggctccagccgtggccgc
cgcggccatgacggccaggaacgccgcggcgaacgccatggttccgaccgcaatcgcggc
cgtcgcggcgaaggccgaggcgaggctggcgacgccgaactcggcggcaaccgtcgcggc
ggtcgccgcggcgaagagcgcaccgaccgtccgcagcgtcccgagcgtgaacgcgagcgc
gaagccgccgcgccggtcgccgccgcccgtcccgagcgcgccccggcgcccgccgccgaa
ggcgacgacgccgccgccggcacccgccgcggccgtggccgccgcggacgcggacgtcgc
gaggaaggcgctccgcaaggcgcgctgagcgaccaggaaaacatggtcgcagccctggcc
gagaccgtcgcatcggccctgccggccgaacagcgggccacgcccgccaatgtgccggcc
gagccccgcgacaaggctgttgacctcgaggatgccgaggacgtgcaggccgacggtgtg
gtcgccgaaggcgaaggcgccgaagccggcgccgatcccgagcgcaagcgccgtcgccgt
cgcagccgtcgcggccgccgcggcgccgacgaagcgtcggcactggccggcgaaggccag
gacggcgacgccctggcgcaggacgcccaggaagcgctgcaggacgtcgcggccgaaacc
gagccggcttcgcccgcttcgaccgaggcgccgacgtacgccgccgccgtgcaggctgcc
acacccgccccgcaggccgccgcggtccagccgtccgctccgcaggcgcccgtcgagccg
gtcgtcgaggcccagccggccgtgacggccgagccggcgcagtccgagcaggccccggcc
gaaccggccaccccggccgcgccctggacggcgcaacccgccgcgccggtcgagcagtcc
gctgcgcccacgcccgtgcaggccgccgaaccggccccggtcaccgagaccagtgctgcc
gaagcccctgccccggccgaagagccagccccgctggccgctccggtccaatcggctccg
gccccggcgcccgccgcgaccatggcgcccccggcagccccggccgccgctccgcagccg
cctgcggcccaggcgcccatctccgtcgcgcccgccgcgccggccgccaccacgcagggc
ctgcatgcgatcgtcaacgccgccggcctgacgtgggtcgaaaccgaccccgagcgccac
gcgcagacccagcagcgcatcgccgcctccgctacgcccgtgcgcctcggccgcgagcgc
aagcctgtgccgccggtgtcctccgcgccgctgcagcaggtggaaacccgccgctaa
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