Burkholderia gladioli ATCC 10248: BM43_2411
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Entry
BM43_2411 CDS
T03826
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM43_2411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgo03019
]
BM43_2411
03009 Ribosome biogenesis [BR:
bgo03009
]
BM43_2411
Enzymes [BR:
bgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BM43_2411
Messenger RNA biogenesis [BR:
bgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM43_2411
Ribosome biogenesis [BR:
bgo03009
]
Prokaryotic type
rRNA processing factors
BM43_2411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJW99126
UniProt:
A0AAW3EP62
LinkDB
All DBs
Position
1:complement(2615038..2618382)
Genome browser
AA seq
1114 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLEIPEGMSMIARTAGIGRSAEELQ
WDLNYLLQLWHAIEAASKSGHNGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADAKPKQEAAVKGITPAS
PAPSAAPQREAAPAPAAAPAPVAAAPAAGGLFGWLKRLFGGAPAAPAPAPEPVKEAASTG
RPARGEKSERGERGGDRNRNNGNRRGGQQAGARDAQAAVAGARQPQQPRGEREGKEAREP
RENREGRGNREPREAREGREGREGRELREAREPRENREGREPRERDNREPREAREGREAR
EGREPRDRAVTAEGTAEAPRQERRERGERGERRKAVPHAATLETVNRGENHAETAEDAER
LAPGAEQAGTDAEAGARDGEERRRRRRGRRGGRRDREEGTGTTPEGVEGAEGVDHEATAT
ADHGADAPVVAAVATVTAATAAVAVEAVAAHAEASAQAVAPNAAETAPEAPAAEAAPAAP
VATPVVEPVAHATPAAEPVVIATPAPVEAPQAVESAPVASEPAPVEATPAVEPVAYAAPV
QVEASPAEAEPAPIQEAAPAVEPAPAVEPAPVAEAAPASAVEPAPAPAVEPAPVAVEAAP
AVTAEPQAAVEPEPAKPVPVPQAPAAAPAPAAAGVEAALDAAGLIWVNTDADKLRAAQEA
AARVVPQARAPRERKALPPVDSTPMQQVETRSQH
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacacagcaggaagaactgcgtgtcgccatcgtcgat
gggcagaaactcatcgacatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaagggcgtggtcacccgcatcgagccctcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccaatacttccgcgac
ggcgtcgacatgcgctccgcgcgcatccaggatgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagaccatggcgcagctcgagatcccg
gaaggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactccag
tgggacctgaactacctgctgcagctctggcacgccatcgaggccgcctcgaagagcggc
cacaacggccagccgatgctgatctacctggaatcgagcctggtgatccgcgcgatccgg
gactatttccagcccgacatcggcgaaatcctcatcgacaccaccgagatccacgaccag
gcgcgagccttcatggacatcgtgatgcccgacaatgtcggcaaggtgaagcgctaccac
gacgacgttcccctgttctcgcgtttccagatcgagcaccagatcgagacggcctactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgatcacaccgaggcgctggtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccacc
cgcaccaacctggaagccgccgacgaagtggcgcgccagttgcgcctgcgcgacctgggc
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgcgaggtcgag
cagcgcctgaaggacgcgctcaagcatgaccgcgcccgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgccccgccctctccgaaggcagc
cacgtgacctgcccgcgctgcaacggcaccggccacatccgcgatacggaatcctcggcg
ctgcaggtgctgcggatcatccaggaagaggcgatgaaggagaacaccgcggcgatccat
tgccaggtgccggtcgaggtcaccgccttcctgctgaacgaaaagcgccaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcattacaagctcgagcgcctgcgtcacgacgacgcccgtctcgacgatccgcgcgcc
tcctggaagatggccgaggaagccgcccgcgagctcgaatcggaaaccggttacagcaag
cgcgccgccgacgcgaagccgaagcaggaagcggccgtcaagggcatcacgccggccagc
ccggcaccgagcgcggcaccgcagcgcgaggcggcccccgccccggcggccgcaccggct
ccggtggccgcggcgcctgccgccggtggcctgttcggctggctcaagcgcctgttcggc
ggtgcgccggccgcgccggctccggcgccggaaccggtcaaggaagccgcctcgacgggc
cgcccggcccgtggcgagaagtccgagcgcggtgagcgcggcggcgatcgcaatcgcaac
aacggcaatcgccgcggcggccagcaagccggcgcgcgcgacgcgcaagccgccgtcgcc
ggcgctcgccagccgcagcagccgcgtggcgaacgcgaaggcaaggaagcgcgggagccg
cgtgagaaccgcgaaggccgtggcaaccgcgaaccgcgcgaggcacgcgaaggccgcgag
ggtcgtgaaggccgcgaacttcgggaagcccgcgagccgcgcgagaaccgcgaaggccgc
gagccgcgcgaacgcgacaaccgcgagccgcgtgaagcgcgggaaggccgcgaggcacgt
gaaggtcgcgagccgcgcgatcgcgccgtgacggcagaaggcacggcagaagcgccgcgc
caggaacgtcgcgaacgcggcgagcgcggtgaacgccgcaaggccgtgccgcacgccgcc
acgctggaaaccgtcaatcgtggtgaaaaccatgccgaaacggccgaggacgccgaacgg
ctggcgccgggcgccgagcaggccggcaccgacgcggaagccggtgcgcgtgacggcgag
gaacgccgccgtcgccgccgcggccgtcgtggtggccgtcgcgatcgcgaggaaggcacc
ggcaccacgccggaaggcgtggaaggtgcggaaggcgtcgaccatgaggccaccgcaacg
gccgatcatggcgcggacgccccggtcgtggcagccgtcgccacggtgactgccgctacc
gctgcggtggccgtcgaagcggtcgccgcgcatgccgaggcgtcggcgcaagccgtcgcc
ccgaacgcagcggaaacggcgccggaagcgccggccgccgaagcggcaccggcagccccg
gtcgccacgccggtggtcgagcccgtggcccatgccaccccggcagccgaaccggtcgtg
atcgccacgccggctccggtcgaagcgccgcaggccgtcgaatcggcaccggtggcgagc
gaaccggctccggtcgaagccactccggcagtcgagcccgtggcgtatgccgcgccggtc
caggtcgaggccagcccggccgaagccgaaccggctccgatccaggaagcagcaccggcg
gtcgaacccgcgccggcagtcgaaccggccccggtcgccgaagcggcgcctgcctccgcg
gtggaaccggccccggctccggccgtcgaacccgcgccggtcgcggtggaagcggctccg
gccgtgaccgccgagccgcaagcggcagtcgagcccgagccggccaagccggtcccggtg
ccgcaggcaccggccgccgccccagctccggccgcggccggcgtcgaagccgcactcgat
gccgccggcctgatctgggtgaacacggatgccgacaagctccgcgccgcccaggaagcc
gccgcccgggtcgtgccgcaggcacgtgccccgcgtgagcgcaaggccctgccgccggtc
gattcgacgccgatgcaacaggtcgaaacccgctcgcagcactga
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