Burkholderia gladioli ATCC 10248: BM43_3136
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Entry
BM43_3136 CDS
T03826
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM43_3136 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgo03019
]
BM43_3136 (rnr)
03016 Transfer RNA biogenesis [BR:
bgo03016
]
BM43_3136 (rnr)
Enzymes [BR:
bgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BM43_3136 (rnr)
Messenger RNA biogenesis [BR:
bgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM43_3136 (rnr)
Transfer RNA biogenesis [BR:
bgo03016
]
Prokaryotic type
tRNA degradation factors
BM43_3136 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
RNase_II_C_S1
WHD_RNase_R
CSD
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
AJX00908
UniProt:
A0AAW3ESE2
LinkDB
All DBs
Position
1:3442440..3444914
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AA seq
824 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPSGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILISQNAKKAKVGQVV
VVELTDFPSRHSQPLGRVTEVLGDIDDPGMEIEIAVRKYGVPHEFSPAALAASAALPDKV
RPIDLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPMKVGRGDGYRLIVAIADVSHYVKPG
EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRCTLVCDMVVTARGEVKGYQ
FYPAVIHSAARLTYTEVAAVLGNTKGPEAARRAELLPYLQNLYGVFKALFAARQKRGAID
FDTTETYIVCNAQGKIEQILPRQRNDAHKLIEECMLAANVCAADFMKRHKQPGLYRIHAG
PTAEKLENLRSFLRGMGLTLGGGDTPHASDYAALMAKIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGQKYTPKAPEGVELNTAISPR
ARAMQKDDDAARNRTRSNNAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTPFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKTPRGPAPTPAAAERGGARVRAMPGITASEDELPARR
KKPVASPGAPAAKEARPAHPAAKKKGGGPASKSPAKKARPRKKY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtatccgtatcccattccgagccgcgaggaaattctcggcgtgctgcgtacg
agcgacgcaccgctggccgcgaacgacatcgccgaggcgctgtcgatcaagcgccaggaa
cgcgagggtttcttccggcgcgtcgccgccatggaacgcgacggccagatccggctcgac
aagcgcgggcattatcaactgacccatccttcgaacttcgtcgcgggccgcgtgcagggc
catcgcgacggctacggcttcctgatccgcgacgacggccaggacgacctgttcctgccc
agcggcgagatgcagaaggtcatgcacaacgatcgcgtgctcgcgcggatcgtcggctac
gaccgtcgcggccgcccggaagggcatgtggtcgaggtcaccgatcgcgccaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtggcccccgaggacaagcgg
atcggccacgacatcctgatctcgcagaacgccaagaaggccaaggtcggccaggtggtg
gtggtcgagttgaccgatttccccagccgtcattcgcagccgctcggccgcgtgaccgag
gtgctcggcgatatcgacgatcccggcatggagatcgagatcgcggtgcgcaagtacggc
gtgccgcacgagttcagcccggcggccctggccgcctcggccgcgctgcccgacaaggtt
cgcccgatcgacctgcgctaccgcgtggacctgcgcgacgtgccgctggtcacgatcgac
ggcgaggacgcgcgcgacttcgacgatgccgtctactgcgagccgatgaaggtcggccgc
ggcgatggctaccgcctgatcgtcgccatcgccgacgtctcgcactacgtgaagccgggc
gaggcgctcgacgtcgacgcgctggagcgcagcacctcggtgtacttcccgcgccgcgtg
atcccgatgctgcccgagaagctgtccaacggcctgtgttcgctgaacccggcggtggac
cgctgcaccctggtttgcgacatggtggtgaccgcgcgcggcgaggtgaagggctaccag
ttctacccggccgtgatccactcggccgcgcggctcacctacaccgaagtggcggccgtg
ctcggcaacaccaagggccccgaggccgcgcgccgcgccgagctgctgccctacctgcag
aatctctacggcgtgttcaaggcgctgttcgcggcacgccagaagcgcggtgcgatcgac
ttcgacaccaccgagacctacatcgtctgcaatgcgcagggcaagatcgagcagatcctg
ccgcgccagcgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgccaacgtc
tgcgcggccgacttcatgaagcgtcacaagcagccgggcctgtaccgcatccacgcgggc
ccgaccgccgagaagctcgagaacctgcgttccttcctgcgcggcatggggctcacgctg
ggcggcggcgataccccgcacgccagcgactatgccgcgctgatggcgaagatccgcgac
cggcccgatgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtctac
agcccggacaatatcggccacttcggtctcgcctacgatgcctacgcgcatttcacgagc
ccgatccgccgctatcccgacctgctcacgcaccgcgcgatctacgcgatcctgtcgggc
cagaagtacacgcccaaggcgcccgagggcgtcgagctgaacacggcgatctcgccgcga
gcccgcgcgatgcagaaggacgacgacgccgcgcgcaatcgcacccgcagcaacaacgcg
atctgggaagaactcggcctgcattgctcggccaacgagcgccgcgccgacgaagcctcg
cgcgacgtcgaggcctggctcaagtgctatttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtcaacggcgtgacgccgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggctggtgcacgtcaccgagctcggctccgactacttccagtacgacgagatc
aagaacgagctgcgcggcgagcgcaccggcatccgctaccggctctcggatcgcgtgcgc
gtgcaggtcagccgcgtcgatctcgatgcacgcaagatcgacttccgcctggtgcgcgac
acacccgtgaagacgccgcgcgggccggcaccgacgccggccgcggccgagcgcggcggc
gcgcgcgtgcgggcgatgccgggcatcaccgcgagcgaggacgaactgccggcacgccgc
aagaagcccgtcgcgagcccgggcgcgccggccgccaaggaagcgcgtcccgcgcatccc
gccgcgaagaagaagggcggtgggccggcctcgaagtcgccggccaagaaggcgcgaccg
cgcaagaaatattga
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