Burkholderia gladioli ATCC 10248: BM43_516
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Entry
BM43_516 CDS
T03826
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03030
DNA replication
bgo03430
Mismatch repair
bgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BM43_516 (dnaE)
03430 Mismatch repair
BM43_516 (dnaE)
03440 Homologous recombination
BM43_516 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgo03032
]
BM43_516 (dnaE)
03400 DNA repair and recombination proteins [BR:
bgo03400
]
BM43_516 (dnaE)
Enzymes [BR:
bgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BM43_516 (dnaE)
DNA replication proteins [BR:
bgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BM43_516 (dnaE)
DNA repair and recombination proteins [BR:
bgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BM43_516 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AJW97924
LinkDB
All DBs
Position
1:complement(536834..540379)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GVKPIAGCDVWITNHDDRDKPSRLLLLVRDKAGYLNLCELLSKAWLTNQYRGRAEVDAQW
LESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYIELQRYGQPGGE
AYVQEAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANPRRQKRFTVEQR
FRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSQE
GLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYAQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEADGKRSKTIRYGLGAVK
GSGQNAIEEILRARKEGGVFKDLFDFCERIDRRLVNRRTVEALIRAGAFDVLTPNRAQLI
ASVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDEKRRLQEEKGALGFYLSG
HLFDAYREEVRRFARMKLGELKEGRDKLVAGVIASLRTQMTQRGKMIIALLDDGTGQCEI
TVFNEQFDANRGLFKEDELLIVQGQARNDAFTGGIRFTADAVMDLERARSRYAQAVRMTM
NGNADAAALRRVLEPHVAKAEPAPAVAAPAPAPSRGGREGRDGGRRAPMPMPNGLAVQIL
YNNARAQGEMRLGDAWRVKPSDTLLAELRAIFGDGTVEIAY
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgtttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgcctcgacgacttggtcaaggcggcggccgccgacggtcagggcgcgctcgcc
ctcaccgatctcggcaatgcattcggtctcgtccgtttctaccaggaagcccgcggcaag
ggtgtcaagccgatcgccggctgcgatgtctggatcaccaaccacgacgatcgcgacaag
ccctcgcgcctcttgctgctggtgcgcgacaaggccggctacctgaacctctgcgagctg
ctctcgaaggcctggctcaccaaccagtatcgcggccgcgccgaggtcgacgcgcaatgg
ctcgaatccgagctcggccagggcctgctggcgctgtcgggcgcgcagcagggcgacatc
ggcatcgcgctggcggccggcaacgccgaggccgcgcgccgccatgcgcagcgctgggcc
cgcgtgttcccgggcggcttctacatcgagctgcagcgctacggccagcccggcggcgag
gcctatgtgcaggaagccgccaagctcgcggccgagctgcagctgccggtggtcgccacg
catccgctgcagttcatgggcgacgaggatttcacggcgcacgaggcgcgtgtctgcatc
tcggaaggcgacatcctcgccaacccacgccgccagaagcgcttcaccgtcgaacaacgc
ttccgcacccaggccgagatggccgagctgttcgccgatatcccctcggcggtgcagaac
acggtcgagatcgccaagcgctgcaacctcaagctcgagctcggcaagcccaagctgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctctcgcaggaa
gggctcgagaagcgcctggtgcaactgttccccgacgaggccgagcgggacgcgcagcgc
gcgacctactaccagcgcctcgaattcgaatgcaacacgatcaagaagatgggcttcccc
ggctacttcctgatcgtggcggacttcatcaactgggccaagaacaacggcgtgccggtc
ggcccgggccgcggctcgggcgcgggctcgctggtggcctattcgctgggcatcaccgat
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaatccggagcgggtctcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgattcagtacgtg
aaggagaagtacggcgccgacgcggtctcgcagatcgccaccttcggcaccatggccgcc
aaggcggccgtgcgcgacatcgggcgggtgctcgacctcggctacatgttcaccgacggc
gtggccaagctgatcccgttcaagccgggcaagcacgtcaccatcgccgacgcgatgaag
gaagagccgctgctgcaggagcgctacgacaacgaggacgaggtccatcagctgctcgat
ctcgcgcagcgcgtcgagggcctcacgcgtaacgtcggcatgcacgccggcggcgtgctg
atcgcgccgggcaagctgaccgatttctgccccttgtacgcccaaggcgacgacggcggc
gtggtcagccagtacgacaaggacgacgtcgaggcggtcgggctggtgaagttcgacttt
ctgggcctgaccaccctgaccatcctcgactgggccgagcgcttcatccgccggctcgat
ccggccaaggccgactggtcgctggcccaggtcccgctcgacgatcccgcctcgttccag
atcctcaagaaagcgaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgctgaaggacgcccagcccgatcgctttgaggacatcatcgcgctcgtgtccttgtac
cggccgggcccgatggacttgatcccgagcttctgcgcccgcaagcacggccgcgagaag
gtggagtacccggatccgcgcgtcgagccggtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctgggcggcgcc
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggtcaagcaccgcgag
atcttcgccgagggcgccgcgaagaacggcctcacgcgcgagaagtcggacgagatcttc
gacttgatggagaagttcgcgggttacggcttcaacaagtcgcacgcggccgcctacgcg
ctgctcgcctactacaccgcctggctgaaggcgcatcaccccgccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcgag
ctcaatggcctgaaggtgctgccgcccgatatcaatcagtccgaataccgcttcgagccg
gtcgcggaagccgacggcaagcgctcgaagacgatccgctacggcctgggcgccgtcaag
ggcagcggccagaacgcgatcgaggagatcctgcgggcgcgcaaggaaggcggcgtgttc
aaggacctgttcgatttctgcgaacggatcgaccgccgcctcgtcaaccgccgcaccgtg
gaggcgctgatccgcgccggcgccttcgacgtgctgacgccgaaccgcgcgcagctgatc
gcctcggtgccgctcgccatggaagcggccgaccaggccgaggccaacgcgatgcaggcc
ggcctgttcgacatgggcgccgagtcgccgcacgcgcatgcgctggtggacgaaccggcc
tgggacgagaagcgtcgcctgcaggaggaaaagggcgcgctcggtttctacctgtcgggg
cacctgttcgacgcctatcgcgaggaagtccgccgtttcgcgcggatgaagctcggcgag
ctgaaggaagggcgcgacaagctggtggccggcgtgatcgcctcgctgcgcacccagatg
acgcaacgcggcaagatgatcatcgcgctgctagacgacggcaccggccagtgcgagatc
acggtgttcaacgagcagttcgacgcgaaccgcggcctgttcaaggaagacgaactgctg
atcgtgcagggccaggcgcgcaacgacgcgttcacgggcgggatccgcttcacggccgat
gcggtgatggatctcgagcgcgcgcgcagccgctacgcgcaggccgtgcgcatgaccatg
aacggcaatgccgacgcggccgcgctgcgtcgcgtgctggagccgcatgtggccaaggcc
gaacccgcgccggccgtcgcggcaccggcgccggcgccgtcccgcggcgggcgcgaggga
cgcgatggcggccgccgcgcgccgatgccgatgccgaacgggctggccgtgcagatcctc
tacaacaacgcgcgcgcgcagggcgagatgcggctgggcgacgcctggcgcgtcaagccg
agcgatacgctgctggccgagttgcgcgccatcttcggcgacggcacggtggaaatcgcc
tactga
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