Burkholderia gladioli ATCC 10248: BM43_519
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Entry
BM43_519 CDS
T03826
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bgo
Burkholderia gladioli ATCC 10248
Pathway
bgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM43_519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgo03019
]
BM43_519
Enzymes [BR:
bgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BM43_519
Messenger RNA biogenesis [BR:
bgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BM43_519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AJX01017
UniProt:
A0AAP1Y328
LinkDB
All DBs
Position
1:complement(542550..544007)
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AA seq
485 aa
AA seq
DB search
MSDSAATSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKQRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIA
EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQAL
DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRDLPLQPLAVDAPVRARQERGERSERSRDRDESRGPRRSHGHG
GERTHHHHSRREAPVDEFFLKPYEPSPSAREPEEATKQPASSEKKSKQPLAALLGGFGMP
RRTSS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattcagcagccacgtccgtcgacgcaactttcgatcagttcggcctcgcgccc
gacattctgaaggccattgcggagcagggctatacgacgccgacgccgatccaggccaag
gcgattccggtcgtgctgtccgggcgcgacgtgatgggcgccgcgcagacgggcaccggc
aagaccgccagcttctcgctgccgatcatccagcgcctgttgccgcaggccaacagcagc
gcctcgccggcgcgccacccggtgcgcgcattgatcctcacgccgacgcgcgagctggcc
gaccaggtggccgccaacgtgcatgcctacgcgaagcacacggcgctgcgcagcgcggtg
gtgttcggcggcgtcgacatgaacccgcagatggccgagctgcgccgcggcgtcgagatc
ctgatcgccacgccgggtcgcctgctcgaccacgtgcagcagaagacggccaacctcggc
caggtgcagatgctggtgctcgacgaggccgaccggatgctcgacatgggcttcctgccc
gacctgcagcggatcctgaacctgctgcccaagcagcgccagaccctgctgttctcggcc
accttctcgcccgagatcaagaagctggcctcgacctacctgagcaacccgcagaccatc
gaggtggcgcgcagcaatgcgacggccaccaatgtcacgcaggtggtctacgagatcgcc
gagggcgacaagcaggccgcggtggtcaagctgatccgcgatcgctcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggtgcgagccgcctggcgcgccagctcgagcgcgac
ggcgtggtcgccacggcgatccacggcgaccgctcccagaacgaacggatgcaggccctg
gatgccttcaagcgcggcgaggtcgaggcgctggtcgccaccgacgtggccgcacgcggc
ctggacatcgccgagctgccggccgtgatcaacttcgacctgcccttcaacgccgaggat
tacgtgcaccgcatcggccggaccggccgcgcgggcgcctcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcaactggccgatatcgagaagctgatcaagcgcgacctg
ccgctgcagccgctcgcggtcgacgccccggtgcgcgcgcgccaggaacgtggcgaacgc
agcgagcgcagccgcgatcgcgacgaatcgcgcggcccgcgccgttcgcacgggcacggc
ggcgagcgcacgcatcaccatcattcgcgtcgcgaggcgccggtcgacgagttcttcctg
aagccctacgagccgtcgccgagcgcgcgcgagcccgaggaggcgaccaagcagccggca
tcgagcgagaaaaagtcgaagcagccgctggccgcgctgctgggcggcttcggcatgccg
cgccgcacgtcgtcctga
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