Brevundimonas goettingensis: IFJ75_00935
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Entry
IFJ75_00935 CDS
T07668
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bgoe
Brevundimonas goettingensis
Pathway
bgoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IFJ75_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgoe03019
]
IFJ75_00935
Enzymes [BR:
bgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IFJ75_00935
Messenger RNA biogenesis [BR:
bgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IFJ75_00935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QTC91534
UniProt:
A0A975C315
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All DBs
Position
complement(184629..186188)
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AA seq
519 aa
AA seq
DB search
MTTKTFESFGLNKALLQALTAEGYTTPTPIQAQAIPDVMLGKDLLGIAQTGTGKTAAFAL
PILHRLAENRVAPAPRTTRTLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQ
ERALQGGLDVLVATPGRLLDHMQQKTIDLSSTEIFVLDEADQMLDLGFVKPIRQIVARIP
AKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSIVHVEQGRKRALLTE
MFADPEYTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRV
LVATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGKDGTAVSFVAGDEMKLLR
DIEKVTRQKIPATDRRNDKALGLLDQSIMASGVASKASMPDDGRGDRQQRGPRNPRRDGV
KSEHGGQPHRVRKSRDGSGARGGGEGQRDRTHHNDRGDRSVASTQPFDPLAADRARSAAN
AQRPQAPRPEGQAKPDGEFKRRPRGRRPSNGGKGYAAKG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaccaagacctttgaatccttcggcctgaacaaggctttgctccaggcgttgacc
gccgagggctacaccaccccgaccccgatccaggcccaggccattcctgacgtcatgctc
ggcaaggacctgctgggcatcgcccagaccggcaccggcaagaccgcggccttcgccctg
ccgatcctgcatcgcctggccgagaaccgcgtcgccccggcgccccgcacaacccgcacc
ctcatcctgtcgcccacgcgcgaactggccagccagatcgccgacagcttcaaggcctat
ggccgtcacctcggcttcaaggtcgcggtggtgttcggcggcgtgaaatacggcccgcag
gagcgcgccctgcagggcggcctcgacgtcctggtcgccacccccggccgtctgctggac
catatgcagcagaagaccatcgacctgtcctcgaccgagatcttcgtcctggacgaggcc
gaccagatgctggacctcggcttcgtcaagccgatccgccagatcgtcgcccgcatcccg
gccaagcgccagaacctgttcttctccgccaccatgccgaccgaaatcggcaagctggcc
ggtgaactgctcaaggatccggtcaaggtccaggtgacgccgcaatcgaccacggtgcag
cgcatctcgcagtcgatcgtgcatgtcgagcagggtcgcaagcgcgccttgctgaccgag
atgttcgccgatccggagtacacgcgctgcctggtcttcaccaagaccaagcacggcgcc
gacaaggtcgcggcctatctggaagccggcggcgtccaggcgggcgccatccacggcaac
aagtcccagccccagcgtgaacgcaccctggcggccttcaaggccggcaagctgcgcgtt
ctggtcgccaccgacatcgccgcgcgcggcatcgacgtcgacggggtctcgcacgtcgtc
aacttcgaactgcccttcgtgccggaagcctatgtccaccgcatcggccggacggcccgc
gcgggcaaggacggcaccgccgtcagcttcgtcgccggcgacgagatgaagctgctgcgc
gacatcgagaaggtcacccgccagaagatcccggcgaccgaccgccgcaacgacaaggcc
ctgggcctgctcgaccagtcgatcatggcctcgggcgtggcctccaaggcctccatgccc
gacgacggccgtggcgatcgtcagcagcgcggcccgcgcaacccgcgtcgcgacggcgtc
aagtccgagcacggcggccagccgcaccgcgtccgcaagtcgcgtgacgggagcggcgcc
cgcggtggcggcgagggtcaacgcgaccgtacgcaccacaacgaccgcggcgaccgttcg
gtcgcctcgacccagcccttcgatccgctggccgccgaccgcgcccgctcggccgcgaac
gcccaacgcccccaggccccgcgtcccgagggccaggccaagcccgacggcgagttcaag
cgccgcccgcgcggccgtcgcccgtccaacggcggcaagggctacgccgccaagggctag
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