Bythopirellula goksoeyrii: Pr1d_53240
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Entry
Pr1d_53240 CDS
T09914
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bgok
Bythopirellula goksoeyrii
Pathway
bgok03030
DNA replication
bgok03430
Mismatch repair
bgok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bgok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pr1d_53240 (dnaE)
03430 Mismatch repair
Pr1d_53240 (dnaE)
03440 Homologous recombination
Pr1d_53240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bgok03032
]
Pr1d_53240 (dnaE)
03400 DNA repair and recombination proteins [BR:
bgok03400
]
Pr1d_53240 (dnaE)
Enzymes [BR:
bgok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pr1d_53240 (dnaE)
DNA replication proteins [BR:
bgok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pr1d_53240 (dnaE)
DNA repair and recombination proteins [BR:
bgok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pr1d_53240 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
QEG37976
UniProt:
A0A5B9QLU9
LinkDB
All DBs
Position
6384329..6387922
Genome browser
AA seq
1197 aa
AA seq
DB search
MSQQFVHLHCHSHYSLLDGASPIKKLVERAKELGMNALALTDHGNLYGALQFYQACRDAE
INPILGYEAYVSPGSRFEKSGATSSKEASFHLTLLAQNRIGFQNLIKLSSRAFLEGFYHK
PRIDRELLADHSEGIVCLSGCVSGEFSRSLLNGNNPATEEQIVQATNVAEWFSGVFGNRY
FIEIQNNGLDIQKQAMEAALVVAQRVGLPVVATSDAHYVRQEDAEAQDVLLCINTGKFRT
DTNRMKMEGDQFFLRSPAQMYEALPGCEDALQRSQEIADSVHIDLELGKRHFPSFTPPEE
KNSDEYLRELCIAGLKERYANEPDRWNGDDLAQEVHDRLDRELGVITKLGFCDYFLIVWD
FVRFAVEKGIPCTARGSGVGSLVCFALKMSHVCPLKYDLLFERFLDESRLEAPDIDIDFC
KERRGEVIQYVKDKYGEANVAQIGTFGTLAARAAIRDVGRTLGMPIFRVDQVVAMVPDQL
GISIEKAIEQSDELKKNYEGDGEIRELLDLAQKIEGLARNVGTHAAAVVIAEKPVDEYVP
LQHVKGKSEVITQWAMGDVERAGLLKMDFLGLRNLTILARTIELVEESRGEKIDPYQFPL
DDQESFDLLCRGETKGIFQLESGGIRDLLQRMKPDHFRDIIATNALYRPGPLEGGMVDDY
IEVKHGRKEAEYPHPAMREVLSETHGVMVYQEQVMRILNRLGGIQLSNAYTCIKAISKKK
LPMIAKYREEFITGAHSQGLDKKKAAELFGMIEKFAGYGFNKSHSTAYALIAYMTAYLKA
HYQVEFMAALLSCDIPGRNFKNKDALVEHLEDCRRMEIEVVPPSVNSSGPDFLVRDGKIL
FGLSAIKACGTGAAEAIEAERQKNGLFKSLFDFCERVDPQLCNRATIEALIKAGAFDGLG
GHRAQLMTLLERALQSGAAAAADRRSGQIGLFDDEEEPTESAAAADMPNVAPWEEKDQLS
REKEVLGFYLTSHPLAEHEQIIRTYCSHNSQSLANLAHRDEVHLGGMLAAIKFSHTKNPR
PGSVHTKYAMWDLEDLEGIVRCIMWPEQFAEFGQLVVPDAILAVIGKVDRRAGSEETNLI
VDKLLPLDEMEQQFSSGMVIRVREEDHGEQGLEKLREIVRGYPGKKKLRLRLDLATGGQV
WLDSNSTGVEASAELNGRIDELLGEGNRIMERVAPTPQSASRDTERQRSRARQNGAR
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgcagcaatttgtccatctgcattgccatagccactacagtctgctggatggtgcg
agccctatcaaaaagctcgtcgaacgcgctaaagaattggggatgaacgcgctggcgctc
accgaccacggcaacctctacggtgcgctgcaattctaccaggcatgtcgcgatgcggag
atcaatccgattctcggttacgaagcctatgtctcgccggggagtcggtttgagaaatcg
ggggccaccagcagcaaggaagccagttttcatctcacgctgctcgcccagaatcgcatc
ggctttcaaaacctgatcaagctctccagccgtgcgtttctcgaagggttttatcacaaa
ccccgtatcgaccgcgagttactcgccgatcactcggagggaatcgtttgcctaagtgga
tgtgtgtcgggagagttcagccgatcgctgctcaacggcaacaatccggccaccgaagaa
caaatcgttcaggcgaccaacgtcgccgagtggttcagtggcgtgtttggcaatcgctac
tttatcgagatccaaaacaatggcctcgacattcagaagcaggcgatggaagccgcgctc
gtggttgcccagcgggttggattgccggtggtcgcgaccagcgatgcccactacgtacgg
caggaagacgccgaggcccaagacgttctcttgtgcatcaacaccggcaagttccgcact
gacacgaaccgcatgaagatggagggagatcaattcttcctgcggagtcctgcacaaatg
tacgaggcgcttcccggctgcgaggatgccttgcagcgttcccaggaaatcgccgactcg
gtccacattgacctggaacttggtaaacgtcactttcccagcttcacaccccccgaagaa
aaaaattcagacgaatatttgcgcgagctctgcatcgcgggcctcaaggagcgttatgcc
aacgagcctgatcgctggaatggggacgatctcgcccaagaagtccacgaccgattggac
cgcgaactgggcgtgatcaccaagctcggtttctgtgactacttcttgatcgtgtgggac
tttgtccgcttcgcggttgagaagggtatcccctgcacggcccgtggttcgggtgtcggt
tcgctggtgtgtttcgccctcaagatgagccacgtctgccccctcaagtacgatctcctc
tttgaacgattcctcgatgaaagtcgtttggaagcgcctgatatcgacatcgacttctgc
aaagaacgccgtggcgaggtcatccaatatgtcaaagacaaatacggcgaagccaatgtt
gcacagatcggcaccttcggcacgctggcagcccgagccgcgatccgcgacgtgggccga
actctcggcatgccgattttccgcgtcgatcaggtagtcgccatggtgcccgatcaattg
ggcatttccatcgagaaggcgattgagcagagcgacgaactcaagaaaaactatgaaggc
gatggtgagattcgcgagctattggatctcgcccaaaagattgagggcctcgcgcgaaac
gtcggtacccatgccgcggcagtagtaatcgcggaaaaaccggtcgatgaatatgtgccg
ctccaacacgtaaagggcaagtctgaagtcatcactcaatgggcgatgggtgacgtcgag
cgcgccggcctattgaaaatggatttcctcggtctgcgaaatctcacgatcctcgcccgc
accatcgaactggttgaggagtcacgcggcgagaaaatcgatccgtatcaattcccgctc
gacgaccaggagtcctttgatctcttatgtcgtggcgaaaccaaaggaatcttccaactc
gaatcgggaggcattcgtgatttgctgcagaggatgaaacccgaccacttccgcgacatc
atcgccaccaacgccctctatcgccccggtccgcttgaagggggcatggtcgacgactat
atcgaggtaaagcacggccgtaaagaagccgagtatcctcatcccgcgatgcgcgaagtt
ctctccgagacccacggcgtgatggtctatcaggaacaggtgatgcggattctcaatcgc
ttggggggcattcaactttccaatgcctacacttgcatcaaggcgattagcaagaaaaag
ctgccgatgatcgccaagtaccgcgaagaattcatcacgggggctcatagccaggggctc
gacaagaaaaaagcggccgaactgtttggcatgatcgagaaattcgccggctatggcttc
aataagagccactcgactgcttacgcacttatcgcctacatgaccgcttatctcaaggca
cactatcaagtcgaattcatggctgccctgttgtcgtgcgacatcccaggacgcaacttc
aaaaacaaggatgccctcgttgagcacttggaagattgccgtcgaatggagatcgaggtg
gtaccgccgagtgtaaattcctctggccccgacttcttggttcgcgatggcaagatcctt
ttcggtcttagtgccattaaggcctgtggcaccggcgccgccgaagcgatcgaagccgaa
cgccaaaaaaatggtctcttcaagagcctgttcgatttttgcgagcgcgtcgatccgcaa
ctttgcaaccgcgctaccatcgaagcgctcatcaaagctggagccttcgacggcttggga
gggcatcgtgcacaactcatgactctcttggaacgggctctgcaatcgggcgccgccgcc
gctgctgatcgccgctcgggccagatcggcctcttcgacgatgaagaagaaccgaccgaa
tcggccgccgctgccgatatgccgaacgtcgctccttgggaagaaaaggatcagctatcc
cgcgagaaagaggtgcttggtttttatctcaccagccatccactggccgagcacgagcag
attattcgcacctattgctcgcacaacagccagtcgctggcaaatcttgcccaccgagat
gaagtccatctgggaggaatgctggcagcaattaagttctcacatactaagaatccccgt
cccggcagtgttcacacgaaatacgctatgtgggacctggaggatcttgaggggatcgtc
cgctgcatcatgtggcccgaacagttcgccgaatttggccagctcgtcgtccccgacgct
atcttggccgtcatcggcaaagtggatcgccgcgctggtagtgaagaaaccaacttaatc
gttgacaaacttttgccgctcgacgagatggaacaacaattctccagcggtatggtgatt
cgcgtccgcgaagaagatcatggcgagcagggcctggagaagctcagagagatcgtccgc
ggctatcccggcaaaaagaagctgcggttgcgactcgacctggccactggcggccaagta
tggcttgatagcaactcaaccggcgtcgaagcttcggcagaactcaacgggcgcatcgac
gaactattaggcgagggcaaccgcatcatggagcgtgtcgctcccacaccacagtctgcc
agccgcgatacagagcgccagcggagtagagcgcggcaaaacggagcgcgttaa
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