Biomphalaria glabrata (bloodfluke planorb): 106065954
Help
Entry
106065954 CDS
T07368
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106065954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgt03019
]
106065954
03041 Spliceosome [BR:
bgt03041
]
106065954
Messenger RNA biogenesis [BR:
bgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106065954
Spliceosome [BR:
bgt03041
]
Complex B
Other components
Prp19-related factors
106065954
Complex C
106065954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_19
Mad3_BUB1_I
NRDE-2
PPR
ARM_TT21
TPR_10
Motif
Other DBs
NCBI-GeneID:
106065954
NCBI-ProteinID:
XP_013080345
UniProt:
A0A2C9JSA2
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MNHKFPAEELFEEEDLPFEEDILRNPYNVKCWLRYIEHKKDAKKEILNTVYERALKQLPG
SYKLWYNYLKLLRSQIRGKVVTDPAYEEVNSAFERSLVFMHKMPRIWLDYLHFIMDQGKI
TRTRRSFDCALRALPITQHCRIWPLYLKFVRSYDLPETAVRVYRRYLKLQKEGSEEYIGY
LISIGWLDEAAQRLADVINDESFVSVEGKSKHQLWNQLCELIAKNPDKVTSLKVEPIIRQ
GLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEEAIQTVITVRDFTQVFDACAQFEKSM
IAAKMETMEEEGASEEDDLELEVRLARLEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVTL
FEGKPREIINTYTEAVQTVDPKLASGKPHTLWVEFAQFYEKNDQIEDARIVFEKATQVPY
KHVDDLACVWCEWAEMELRHNNSEEALKLMQRATTPLKRQVAYHDETETVQTRVHKSLKV
WSLYADLEESFGTFKSCKSVYDKIIDLRIATPQIIMNYAMFLEENNYFEEAFKAYEKGIA
LFKWPNVYDLWNTYLNKFITRYEGTKLERARDLFEQCLEKCPEKYAKEIYLLYAKLEMEH
GMARHAMAVYDRATRAVLPEEQYKMFNIYIKKAAEVYGVTHTRTIYEKAIEVLPNDQARE
MCLRFADLEKKLGEIDRAQAIYAHGSQISDPRVAPQFWESWKEFEINHGNEDTVREMLRI
KRSVQATYNTQVNFMSAQMLAAQTKKQDNINLEEGNEMQQLEARARQLAQESLKEKAQAE
KKLLFVRSSTTQEELGELTKTNNPDEINIDDDEDDTDEEEEVEEMEVEQQTVPSEVFGGL
APHRTEDDDDDDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataaatttccagcagaagaactgtttgaagaagaagatcttccttttgaagaa
gatatactgagaaacccttataatgtcaagtgttggctaagatatattgaacataaaaag
gatgccaaaaaagagattcttaacacagtttatgaaagggctcttaaacaacttccagga
agttataaattatggtacaattacctgaaattgctgcgttctcaaatacgtggcaaagtt
gttacagatcctgcttatgaagaggtgaatagtgccttcgaaagatctcttgtatttatg
cacaagatgcctagaatctggctggattatcttcattttataatggaccaaggaaagata
acccgaacaagaagatcttttgattgtgcactgagagccctccctataacacaacactgc
agaatatggcctctttacctcaaatttgttagatcttatgacctcccagaaacagctgtg
cgtgtttacaggaggtatctcaagcttcaaaaagaaggctcagaagaatatattggctat
ttgatttccattggttggcttgatgaggcagctcaaagattagcagatgttatcaatgat
gaatcttttgtctctgtagaaggaaaatctaaacatcaactttggaatcagttatgtgaa
ttgattgctaagaacccagataaagttacatcactgaaagtggagcctatcataaggcaa
ggattaaagcgctacacagatcagataggtgttttgtggaactctttagcagattactat
attagaggaggacattttgaaagggctagagatatttatgaagaagctatacaaacagtt
ataacagtcagagattttacccaagtatttgatgcctgtgcccagtttgagaaaagtatg
atagctgctaaaatggaaaccatggaggaagagggagccagtgaagaagatgacttagag
ttagaagtgcgccttgcgaggcttgaagatctaatggacagaagacctttacttcttaac
agtgttctcttacgtcagaatcctcataatgtgcatgagtggcacaaacgtgtcacatta
tttgaaggcaaacctagagaaataatcaacacttacacagaggcagtccagactgtggat
cctaaacttgcttcaggaaagcctcacacattatgggtggagtttgctcaattttacgag
aagaatgatcaaatagaagatgctcgtatagtgtttgaaaaggccacacaggtaccttac
aagcatgtggatgatttagcatgtgtctggtgtgaatgggcagagatggaactcaggcac
aacaatagtgaggaagccttaaaattaatgcaaagggcaacaactccactgaaaagacaa
gtagcatatcatgatgagacagagacggtacagacacgtgtgcacaagtctcttaaagtc
tggtctctctatgcagatttggaagagagttttggaacatttaagtcatgtaaatctgtg
tatgacaagatcattgacctgcggatagccactcctcagatcatcatgaactatgccatg
tttttagaagaaaacaactattttgaagaagcttttaaggcttatgaaaaaggaatagct
cttttcaagtggcccaatgtctatgatttgtggaatacttatcttaacaagttcataact
agatatgaaggtaccaaattagaaagagccagagatttgtttgagcagtgtttagaaaaa
tgtccagaaaaatatgctaaagaaatttatctactgtatgctaaacttgaaatggaacat
ggaatggcacgtcatgctatggctgtttatgacagagcaacacgagcagtgctaccagag
gaacaatataaaatgtttaatatttacatcaagaaagcagcagaagtgtatggtgtgact
cacactagaacaatctatgagaaagctattgaggttttgcccaatgaccaagcaagagaa
atgtgcttacgatttgctgatctagaaaaaaaacttggagagatagacagagctcaggct
atatatgctcatgggtcacagattagtgatcccagggttgcccctcagttttgggagtct
tggaaagagtttgagatcaatcatggcaatgaagacactgtccgtgaaatgttgagaata
aaaagaagtgtgcaagcaacatataatacacaggtcaattttatgtcagctcagatgtta
gcagcacagaccaagaaacaagacaatataaatttagaggagggtaatgaaatgcaacaa
ctagaggcacgagcaaggcaactagcacaagaatccctcaaagaaaaagcccaagctgag
aaaaagctcttgtttgttaggagcagcaccacacaagaagaacttggagaacttaccaag
accaacaatcctgatgaaattaatattgatgatgatgaagatgatacagatgaggaagaa
gaagtggaagaaatggaagtggaacaacaaacagttccttctgaggtatttggaggtttg
gcaccacacaggacagaggatgatgatgatgatgatgactga
DBGET
integrated database retrieval system
