Biomphalaria glabrata (bloodfluke planorb): 106066765
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Entry
106066765 CDS
T07368
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03013
Nucleocytoplasmic transport
bgt03015
mRNA surveillance pathway
bgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106066765
09122 Translation
03013 Nucleocytoplasmic transport
106066765
03015 mRNA surveillance pathway
106066765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgt03019
]
106066765
03041 Spliceosome [BR:
bgt03041
]
106066765
Enzymes [BR:
bgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106066765
Messenger RNA biogenesis [BR:
bgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106066765
Spliceosome [BR:
bgt03041
]
Complex C
Other components
EJC/TREX
106066765
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106066765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
Utp25_C
DEAD
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
106066765
NCBI-ProteinID:
XP_013081297
UniProt:
A0A2C9JSV3
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MLIDIVELPVFSTGLSEERIVRDICKTNMAEDSVILDYDDEENEPTVDAAGGDGPVKKDV
KGTYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEALFTYFRSFKCAVMPLRKHPRRLTV
KSLHFFCLFLMALLNPLRQLKVYAIYFSDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP
VCKKFMQDPMEVYVDDDSKLTLHGLQQHYAKLKDNEKNRKLFELLDVLEFNQVIIFVKSI
QRCMALAQLLQEQNFPAIAIHRAMTQEERLSRYQSFKDFQKRILVATDLFGRGMDIERVN
IVFNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQERFEVNITELPDE
IDISSYIEGR
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgttaatagatattgtcgaacttcctgtcttttcaaccggtctttcggaagaaaggatt
gttcgagatatctgtaaaacaaatatggctgaagatagtgttattctcgattatgatgat
gaagagaatgaacccactgttgatgcagctggtggagatggaccagttaaaaaagatgta
aaaggaacatacgtgtcgattcacagttctggtttcagagattttcttctcaagccagag
cttcttagagctattgtggattgtggatttgaacatccatcagaagcgctttttacctat
ttccgttcttttaaatgtgctgtcatgccactaaggaaacaccctaggcgtcttactgtt
aagtcgttacatttcttttgtttatttttaatggcattactgaatcctttaagacaacta
aaggtttatgctatttatttttcagacatgcgcagagatgttcaagaaatttttcgtatg
actccacatgagaagcaagtgatgatgttcagtgccactttaagcaaggaaattcgccca
gtttgcaagaagttcatgcaagatcctatggaagtgtatgtggatgatgattctaaactt
accttacatggcttacaacagcattatgccaaattgaaggataatgaaaagaataggaaa
ctttttgaactcctagatgtcttggagttcaatcaggtcatcatatttgtgaagagcatc
cagcgttgtatggctttggcacagctattacaggaacagaactttccagctattgctatt
cacagagcaatgactcaagaagagaggctgtctcgttaccaatcttttaaagatttccaa
aagcgtatattagtggctacagatctgtttggcagaggaatggatattgaaagagttaac
atagtgttcaactatgacatgcccgaaaactcagacacttacttacacagggtggcaaga
gcaggacggtttggaactaaaggcctggctattacatttgtgtcagatgaaaatgatgca
aaaattttgaatgaggttcaggaaagatttgaagtgaatataacagaattaccagatgaa
attgatatttcttcttacattgaaggtcgttaa
DBGET
integrated database retrieval system
