Biomphalaria glabrata (bloodfluke planorb): 106070717
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Entry
106070717 CDS
T07368
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106070717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgt03019
]
106070717
Messenger RNA biogenesis [BR:
bgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106070717
mRNA degradation factors
5'-3' decay
Decapping complex
106070717
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106070717
NCBI-ProteinID:
XP_013086129
UniProt:
A0A9U8EFZ7
LinkDB
All DBs
Position
Unknown
AA seq
823 aa
AA seq
DB search
MALSQDEHRFFSALGAGKGEENELIQAPEEEEDFDILNDETFGDLGDVGEFDWEDTHKRT
EELEDSFIPDHHGELTKDSGFITMDRGYSTATQEEELEQSISRLMVDDVDSKGFDVNGQP
IPGVMRKSHLDKLFGPNSPPGYMDLETLHSPGKNIWGSPSADNHFQKPVNNALQALFASA
KQAAFRDFPGVFSDSSSTSVQIPNLPLPSEAQTLAEIENSMLAREHHKPRVLTSEELERQ
LRGESPIHTDQKPYSLPVQIPPVGTSVAFRKQDTPMMGQIGAKLANGGSSPINIIRSPPM
ALQGFHESPVVIGRSPSPSSTHFMPPLPMISPSLLPPFPPVLMANCLFGNALSRPPPPAG
LPPIPNSPFGSPTAAYILPRQKPPLPYQHQQQYPGHHWDGNHVDFRGSGGYSNQHGREHQ
DYNVHRGPGQHGHFNRHHTQDYQDKDMEDEYAGLMTKKEKDWIIKIQLIQLQTDNPYLDD
YYYTYYTMKKKLADREKQGDKQNNELELLIPNMVKIEPRTYTPAQFEGSLGRLTAASVHN
PRQIIDICRTVSPTNEETTPKSVSKELRRYRQLLMDIEKGFNVILDIDDIEKKVLALPNE
NRMPLFEERIEKIQIVYDYFMQDQTYKNFVPTLTVRKGRKLLARLMPLLNKVQWLSIVTV
LLSHLPVLIKKDQEEEGLQVLLPPLSRHIAQCDLEVLVHYAAILQKHPQQNIEGLSLLLH
NSFGISLLCCLIKAGEDYFRNTSPVDIDNQFKTQWSQFIEEFVMSLESVPKEELAWPDTH
QPQIGDHVDRFINNKLIGSVEDKLAHFSKPRPKTTIEKYDEGS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcgttatcacaagatgagcacagatttttttctgctcttggagcaggaaaaggtgaa
gaaaatgaactcattcaagcaccagaagaggaggaagattttgatattttaaatgatgaa
acatttggagacttgggagatgttggagagtttgattgggaagacactcacaaacggaca
gaagagttggaggactcctttattcctgatcatcatggagaacttactaaagactctggt
tttatcaccatggatagaggctattctactgcaactcaggaagaagagctggagcaatct
atcagtcggctcatggtagatgatgtagatagcaaagggtttgatgtaaatggacagcca
atcccaggggtcatgagaaaatctcatctggataaactgtttggtcctaattcacctcct
ggatatatggatttggagacgctgcattctccaggaaaaaacatatggggatcgccatct
gcagacaatcactttcaaaagccagtcaataatgctctgcaggccttatttgcttctgct
aaacaagctgcttttagagactttccaggggttttcagtgactccagttctacttcagtc
caaataccaaatttgcctttaccatctgaagctcaaactttagccgaaatagaaaacagc
atgcttgctcgtgagcatcataaacctcgggtgctgacctccgaagaactggagcgtcag
ctaaggggagagtctccaatacatacagatcagaaaccatactcgctgcctgtacagatt
cctcctgttggtacatctgtggctttccgaaaacaggatacacctatgatgggtcagata
ggagcaaaacttgctaatggaggaagttcacctatcaatataataagatctcctccaatg
gcattacaaggttttcatgaatctcctgttgtaataggccgatccccttctccatcatcc
acacactttatgcctccattaccaatgatatctccaagtctattgccaccttttccacct
gtgttaatggctaattgcctgtttggaaatgcattgtcgagacctccaccacctgcagga
cttccacccatccccaattctccatttggaagcccaactgctgcttatatattacctaga
caaaaacctccacttccttatcagcaccaacagcaatacccagggcaccattgggatgga
aatcatgtagacttcagaggatcaggtggttacagcaaccagcatggaagagagcatcag
gattataatgttcacagaggacctggtcagcatggtcattttaacagacatcatacacag
gactatcaagataaagatatggaagatgaatatgctggcttgatgaccaagaaagagaaa
gattggatcataaagattcaactaatacagcttcaaacagacaacccctatttagatgat
tattactatacatactacactatgaagaaaaagctggcagatcgagagaaacaaggtgac
aaacagaataatgagctggaacttttgatccctaacatggtgaagattgaacccagaact
tacacaccagctcaatttgaaggttcgttgggacggcttactgctgccagtgtacataac
cctagacaaataatagatatttgccgcactgtttctcccacaaatgaagagactactccc
aaaagtgttagtaaagagttgcggcgctacagacagttgttgatggatattgaaaagggt
ttcaatgtgattttggatattgatgacatagagaaaaaagtacttgctctgcccaatgag
aacaggatgcccttatttgaggaacgtatagagaaaatacaaattgtttatgattacttt
atgcaagaccagacctataaaaattttgtaccaacactaactgtaagaaaaggccgtaaa
cttttagccagattaatgcctctgttaaataaggtccagtggttatctattgttactgta
ctgctatcacatttaccagtcttgattaaaaaagaccaggaagaagagggcttgcaggtt
ttgttacctccactctctcgccatattgcacaatgtgatttagaagttttggttcattat
gctgcaatactacagaagcatccacaacagaatatagaaggtctttcacttctgctgcac
aactcatttggtatttctttgttatgttgtctgatcaaggctggagaggattactttagg
aatacatcacctgtggatatagataaccagttcaagactcaatggagtcagttcatagaa
gaatttgttatgagtttggaaagtgtacctaaagaggaacttgcatggccagatacacat
cagccacaaattggagatcatgtagacagatttataaacaataagttgattggctctgtg
gaagacaaattggcacatttttcaaagccccgcccaaagaccaccattgaaaaatatgat
gaaggcagttag
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