Biomphalaria glabrata (bloodfluke planorb): 106075040
Help
Entry
106075040 CDS
T07368
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
bgt
Biomphalaria glabrata (bloodfluke planorb)
Pathway
bgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106075040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgt03019
]
106075040
Enzymes [BR:
bgt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106075040
Messenger RNA biogenesis [BR:
bgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106075040
mRNA degradation factors
3'-5' decay
Pan complex
106075040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
PEP5_VPS11_N
EIF3I
Motif
Other DBs
NCBI-GeneID:
106075040
NCBI-ProteinID:
XP_013091413
UniProt:
A0A2C9L4R2
A0A9U8EKV9
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MDYSGLSRFRPPHPQDTQNMPPPAHPNFPNPNMHRESLGPNNVFPNTAVPPRMPMGYPPI
SDAHIPSAFGMDQGMQVNYQSGSMQNTNLPPGYHSPMGNPMSHPPQNLHNFQNSNQRPNL
SHHNFHQHPPQHQRNAYHNNPPQQHMNDFRQQHRYQRQHQQHGRQQHHNPIINEFHPHHQ
GLDFHSQHNNMAPDFHSLQQGQVVTDYHQQEYSHQDPILSHHHDYQHNSGQDLQGMMGTY
VDHNSMGMQGLIGEHGMMNQLEGHMLGGGDAYSQHQMMQIYGDPSLQDLRDGDYIPVACQ
LMDKSANASITCVNFDGQQELLWAGNQRGYVASYYGTEFFKYSAFRVNLEEDVRMNLSFP
QGVLSITPSLLRGTLRRGLGVFTFKDPLLHDMTCMMMRGDTSVLIAGHHKQVLEVDIIQN
CLSNVFEVKDSGIAIFRGTDRYVCGGDSTGKVTVYDSKTLRAEHTLEAHSSCLSDFDIHD
NLLITCGFSNRMNTLTPDRLLMVYDMRVMRAMAPIQVSIDPTFLRFVPTIPNHLIVVSQM
GSFQLVETITGGAPNTRLSYPVDTNGSLIVAFDVSQTYQALAFGDSSGHVHLYVSNPNCA
FNPYSEPTEFPDQVESYEPIDINDKLAAYSAIPMPYPAQGPLVSDFPEHMLARTYRKPMP
IDAEILRTMKVYQNIGYAPNPNKQKRNVIPYVLNDKANKDRNSSVPESPMGRGEDPFMTV
PKRYQRVEIKYSKLGVEDFDFRHYNKTNLAGLEPHIPNAYCNSMLQVLYYIEPLRCALLG
HVCNREFCLSCELGFLFHMLDLQKGNTCQATNFLRAFRTMPQVSALGLVLHDADESSGRV
DFPRLIQSWQRFVLMQIHEEICVPVESSDNSSSDLKTESKKETEEKKLTQKNKKNNQKGS
ESVESKKDSSADKTEEGENCEESADEPQAPMTRSIIRDLLGINIRSTLQCKCGLTSERTV
DGTHINLMYPECRPPGLPAPLFISFAEVVQHSMTAATNIQAWCSVCNRYQHHCQRKSIQN
LPDILALNCHTENEKNLDFWHTQFQIIRQRHKETAPPMAYVKTSSQSSIKCRFGMACHRP
DCRFQHDGPRQVDSEVKKKQSEEDDEFGPSWIPLGLKIVRKQDGSVEVTEISDEEPLPLQ
QEDDVRYYELYSVVSHVLSSSGGNLVCCLKVGEKYHQRKERVTCTQWYLINDFCITPVEK
DEAVDFKLDWNVPCIIHYTRRDYVQLHDLAVKPWSSPDVLFNDSALLNPERHKLTFLPLQ
QDELPKAGDIVALDAEFVSLKEEEAELRSDGTRSTLVPTQMSAARITCLRGSGPNKGEPF
IDDYIVTQEQVVDYLTQYSGIKPGDLDPSVSTKYLTTLKATYLKLRYLIDSGVIFVGHGL
KKDFRVINILVPKGQVMDTVDLFHLPKQRYISLKFLAWYYLKINIQSYTHDSVEDARTAL
QLYKEYQRLKDEGQDKVLAAIKDLYEAGRKISWVIPDVQEVAGEDIGEADFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atggattactctgggctgtcaagatttagaccaccacatcctcaagatactcaaaatatg
cccccaccagcgcacccaaattttcctaatccaaacatgcacagagagtcgcttggcccc
aacaatgtatttcccaatacagcagttccacctcgaatgcctatgggctatccaccaata
agtgatgcacacataccttcagcttttgggatggatcaagggatgcaagtaaattatcag
tctggatcaatgcagaacacaaatctaccacctggttatcattcacctatgggaaaccca
atgtcacacccgcctcaaaatttacacaattttcaaaactcaaatcaacgaccaaattta
tcacatcacaattttcaccagcatccgccccagcaccagcgtaatgcatatcataataat
cctccacagcagcatatgaatgatttccgtcagcagcatcgctaccagcgtcagcatcag
caacatggcagacagcagcaccataatccaataattaatgagtttcacccacaccaccag
ggactagattttcattctcagcacaataatatggctccagatttccactcactgcaacag
ggccaggtggtgactgattatcaccagcaggagtactcccaccaggacccaatcctgtca
caccaccatgattaccaacacaacagtgggcaagatcttcagggcatgatgggcacttat
gtggaccacaatagtatggggatgcaaggccttattggggagcatggtatgatgaatcaa
cttgaagggcacatgttaggtggtggtgatgcttattctcaacatcagatgatgcagata
tatggggatccttctcttcaagaccttagggatggagattatatccctgttgcatgtcaa
cttatggataaatcagctaatgctagtattacatgtgttaattttgatggacagcaggaa
ctactgtgggctggaaaccaaaggggctatgtggcttcctattatggaacagagtttttt
aaatattcagcttttagggtgaatcttgaagaagatgttcgtatgaatctttcttttcct
caaggagttttgtctataacccctagtctgctgcgaggaacactcagacgtgggcttggt
gtatttactttcaaagatccactacttcatgacatgacttgcatgatgatgagaggagac
acatctgttctcattgctggtcaccacaagcaagttcttgaagtggatatcattcaaaac
tgtttgagtaatgtttttgaggtaaaagattctggcattgcaatcttcagaggaacagat
cgttatgtttgcggtggagatagtactggaaaggtgacagtgtatgattccaaaacattg
agagccgaacacacattggaagctcacagcagctgtctgtctgacttcgatatccatgac
aatttactcattacttgtggattttctaatcgcatgaacaccctaacacctgatcgtctt
ctcatggtgtatgatatgagagtgatgcgggcaatggcaccaatacaagtttccattgac
ccaacttttcttagatttgtgccaactatacctaatcacttaattgttgtatctcaaatg
ggcagctttcaacttgttgaaacaatcactggtggtgctccaaacactcgtctgtcatat
cctgttgatactaatggctcattaatagtagcttttgatgtgtcacagacctatcaagct
ttagcatttggtgatagctcaggacatgtacatttgtatgtttcaaatcctaattgtgct
ttcaacccttattcggaacctactgaatttccagatcaagttgaatcttatgaacctatt
gacataaatgacaaactggcagcttattctgccattcctatgccatatcctgcacaaggt
ccgcttgtctcagatttccccgaacatatgttggcaagaacttacagaaaacccatgcca
attgatgctgaaatactacgtacaatgaaggtctaccaaaatattggctatgcacccaac
ccaaacaagcagaaaagaaatgtaatcccttatgtcttgaatgacaaagccaacaaagat
agaaattctagtgttccggagtcacctatgggcagaggtgaagatccttttatgactgtc
cctaagcgatatcagagagtggaaattaaatactctaaactcggtgtagaagattttgat
ttcagacattacaataaaaccaacctggctggtttagaaccccacattcctaatgcatat
tgtaattcaatgttacaggttctttactacatagaacctcttcgttgtgccttgttggga
catgtatgcaacagagagttctgtctatcctgtgagctaggctttcttttccatatgctg
gatttacagaaaggaaatacttgccaggctaccaattttcttagagctttcagaactatg
cctcaagtctcagctttagggcttgtacttcatgatgctgatgaaagtagtggtagagtt
gatttcccacgactcattcaaagttggcaaagatttgtcctgatgcagattcatgaagaa
atatgtgttcctgttgagagctcagacaactcttcttcagatttgaaaacagaatcaaag
aaagaaacagaggagaaaaaactgacacagaaaaacaaaaagaacaaccaaaaaggctca
gaaagcgttgaatcaaagaaagattcttctgcagataaaactgaagagggtgagaattgt
gaagaaagtgctgatgaaccccaggcacctatgacaagatcaattattagagacttgcta
ggcatcaacattaggtcaactctgcaatgcaagtgtggcttgacaagtgaacgaactgtg
gatggcactcacatcaatctaatgtacccagaatgcaggcctcctggtctacctgctcca
ttgttcattagttttgcagaagtagttcagcatagcatgactgctgctaccaacatccag
gcctggtgctcagtgtgcaacagataccagcatcattgtcaaagaaaaagcattcaaaat
cttccagatattttagctcttaattgccatacagagaatgaaaaaaacttggacttttgg
cacacccagtttcagattattcgccagcgtcataaagaaacagcacctccaatggcttat
gtaaaaacttcctctcagtcttcaatcaaatgtagatttggaatggcttgtcacagacct
gactgtcgtttccaacatgatggcccaaggcaagttgacagtgaagtcaagaaaaagcaa
tcagaagaagatgatgagtttggacctagttggattccactaggattaaaaatagtcaga
aagcaagatggtagtgttgaagtgacagaaatctctgacgaggagcctctgcctttacag
caagaagatgatgttagatattatgaactgtacagtgtagtcagccatgtacttagttct
tcagggggcaatctggtatgttgcctgaaagttggagagaagtaccatcagcgcaaggag
cgtgtcacttgcactcagtggtatctcatcaatgacttttgcattacacctgtagaaaag
gatgaagctgttgacttcaagttggactggaatgtgccatgtattattcactacacccgt
agggactatgtacaacttcatgatcttgctgtgaagccttggtctagtcctgatgtctta
tttaatgattcggctctgctgaacccagaacgtcacaaattaacattcctgcctctgcag
caagatgaactacctaaagctggagacattgtcgcactggatgctgaatttgtttctctt
aaagaggaagaagctgaattgagaagtgatggaactcgatcaacactggtccctactcag
atgtctgcagcaagaattacctgtcttagagggagtggacctaataaaggagaacctttt
attgatgattacattgtaacacaagaacaggtggttgactatctgacacagtattctgga
ataaaacctggcgatttggaccccagtgtgtccacaaaatatctaacaactttgaaggcc
acttacctcaaacttcgctacctgattgacagtggcgtaatatttgttggtcatggactg
aagaaagattttagagtcatcaatatcttggttcctaaaggacaagttatggatactgtg
gatttgttccatctcccaaagcagcgttacatttccttgaaatttctggcctggtactac
ttgaagattaacattcagtcttacacccatgattctgtggaagatgcacggacagcctta
cagctgtacaaggaatatcagcgtttgaaagatgagggtcaagataaggtgcttgctgcc
atcaaggatctttatgaagcaggcagaaaaatatcttgggttataccagatgttcaagaa
gtagctggggaagatattggagaggcagattttctttaa
DBGET
integrated database retrieval system
