Burkholderia glumae LMG 2196 = ATCC 33617: KS03_1874
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Entry
KS03_1874 CDS
T03820
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bgu
Burkholderia glumae LMG 2196 = ATCC 33617
Pathway
bgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS03_1874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgu03019
]
KS03_1874
03009 Ribosome biogenesis [BR:
bgu03009
]
KS03_1874
Enzymes [BR:
bgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KS03_1874
Messenger RNA biogenesis [BR:
bgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KS03_1874
Ribosome biogenesis [BR:
bgu03009
]
Prokaryotic type
rRNA processing factors
KS03_1874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY67593
LinkDB
All DBs
Position
I:complement(2037056..2040433)
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AA seq
1125 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLEIPEGMSMIARTAGIGRSAEELQ
WDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTGDVKPKQEAAVKGITPDH
PAPGAPQREAAPVAPAAAPVAAAPVPVAASGGGFFGWIKSLFGGQPPAPAPAPAPVQEVE
TQARPSRERGEKSERGERGGDRNRNPNRRNGQPAGARDTQAAAGSRVPQARGEREVKEGR
EPRENRGEAREGRGNREPREAREGREAREPREVREPREPRAAREPREAREPREGREPRES
AVTADGAEAPRQERRERGERGERRKPVPHAATLETVNRGETAPAEATEDAELLAPGAELA
ADAEAGARDGEERRRRRRGRRGGRREREEGVAGAAPEGAEAGEGTQQAVEAEAGHAHGSE
APVAAAVATVTVATAAVAAEAVVSHAAASTPVEATRTEATQAETAPAALMPAPAAETAPA
EQAATPAASSVERVEPAAPAEPVVLATPAPAEPAPATEPAAVAHVETAPQEAAAANVSEP
PAVPTAPVIEPAVPTVEPTQAALFEPAPAIEPAAQAPAAEPAPAAPQVAESEPFVAPAPV
EPAPAPAEPAPAAAAEPQPVAAAPVAAPMETAAAPQAATASAPLGIEAALDAAGLTWVNT
DANKLRAAQQAAAQIVPPVRTPRERKVLPPVDPTPMQQVETRSQQ
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacacagcaggaagaactgcgtgtcgccatcgtcgac
gggcagaagctcatcgacatcgatatcgaaaccgccgggcgcgaacagcgcaagggcaac
atctacaagggcgtcatcacccgcatcgagccctcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgcctttcaaggaagtcgcccgccagtatttccgcgac
ggcgtggacatgcgttccgcgcgcatccaggatgcgctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgcgctgaccaccttcatctcg
ctggccggccgctatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgtcaggaactgcgcgaaaccatggcgcagctcgaaatcccc
gaggggatgagcatgatcgcccgcaccgcaggtatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcacgccatcgaggccgcctcgaagagcggc
catgcgggccagccgatgctgatctacctggaatcgagtctcgtgatccgcgcgattcgt
gactatttccagcccgacatcggcgaaatcctgatcgacaccaccgagatccacgatcag
gcgcgtgcgttcatggacatcgtgatgccggacaacgtcggcaaggtgaagcgctaccac
gacgacgtgccgctcttctcgcgcttccagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccctcgggcggggcaatcgtgatcgaccacaccgaggcgctggtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccacc
cgcaccaacctcgaggccgccgacgaagtcgcgcgtcagctgcgcctgcgcgatctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgcgaggtcgag
cagcgcctgaaggacgcgctcaagcacgatcgcgcccgggtgcagatgggcaagatctcg
cgtttcggcctgatggagctgtcgcgccagcggctgcgcccggcactgtcggaaggcagc
cacgtgacctgcccgcgctgcaacggcaccggccacatccgcgataccgaatcgtcggcg
ctgcaggtcctgcgcatcatccaggaagaggcgatgaaggagaacaccgcggcaatccac
tgccaggtgccggtcgaagtcaccgccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatccccaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgccacgacgatgcacgcctcgacgatccgcgtgcc
tcgtggaagatggccgaggaagcggctcgcgagctcgagtcggaaaccggctacagcaag
cgcaccggcgacgtgaagccgaagcaggaagcggccgtcaagggcatcacgcccgaccat
ccggcaccgggcgcgccgcagcgcgaagccgcgccggtcgccccggcggcagctccggtc
gcagcggcacccgtgccggttgccgcctccggcggcggtttcttcggctggatcaagagc
ctgttcggcggccagccgcccgcaccggcgcccgcccccgctcccgtccaggaagtggag
acgcaagcgcgtccgagccgcgagcgcggcgagaaatccgagcgcggcgaacgcggcggt
gatcgcaaccgcaatccgaatcgccgcaacggccagccggccggcgcgcgcgacacgcag
gcggcggcgggtagccgcgtgccgcaggcgcgcggcgaacgcgaggtcaaggaaggccgc
gaaccgcgtgaaaaccgcggcgaggcacgcgagggccgcggcaatcgcgaaccgcgcgag
gcacgcgaaggccgcgaggctcgcgagccgcgtgaagtgcgcgagccgcgcgaaccgcgt
gcagcccgcgaaccgcgcgaggcacgcgaaccgcgtgaaggccgcgagccgcgtgaaagc
gcggtgacggccgacggtgccgaggccccgcgtcaggaacgacgcgagcgtggtgaacgc
ggcgaacgccgcaagcccgtgccgcacgcggctacgctcgaaaccgtgaatcgcggcgag
acggcacccgccgaagccacggaagacgcggaactgctggcaccgggcgccgaattggcc
gccgacgcggaagccggtgcgcgcgacggcgaggaacggcgccgccgccgccgcggccgt
cgcggcgggcgccgcgagcgcgaggaaggcgtggcgggcgccgcaccggaaggcgcggaa
gccggcgaaggcacccagcaagccgtggaggccgaagccggccatgcccatggcagcgaa
gcgccggtggcggcagccgtcgccaccgtgaccgtcgccacggccgcggtcgcggccgag
gcagtggtttcgcacgcagcggcatcgacgccggttgaagcgacgcggaccgaagcgacg
caggctgaaacggcaccggcagcgctgatgccggcaccggccgccgagacggcacccgcc
gagcaggccgcgacgcccgccgcgtcgtccgtggagcgggtcgaacctgccgcgcccgcc
gagcccgtcgtgctggccacgccggctcccgcggaaccggcacccgcgaccgaacccgcg
gccgtcgcccacgtcgagacggcaccgcaggaagccgctgcggccaacgtgagcgagccg
ccggccgtgccgacggcaccggtgatcgaaccggcggttccgacggtcgagccgacgcag
gctgcgctgttcgaaccggctccggcgatcgaaccggccgcccaggcaccggcggccgaa
ccggcaccggctgccccgcaggtagcggagtccgagccattcgtcgcgcccgcaccggtg
gaaccggcaccggcaccggccgagccggcacccgcggcagccgccgagccgcaaccggtc
gccgctgcccccgtggcggctccgatggaaaccgctgcggcgccgcaagcggctactgcg
tcggccccgctcggcatcgaggccgcgctcgacgcggccggcctgacctgggtcaacacc
gacgcgaacaagctgcgtgccgcccagcaggccgccgcgcagatcgtcccgccggtgcgc
accccgcgcgagcgcaaggtgctgccgccggtcgacccgacgccgatgcagcaggtcgag
acccgttcgcagcagtaa
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