Burkholderia glumae LMG 2196 = ATCC 33617: KS03_3275
Help
Entry
KS03_3275 CDS
T03820
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bgu
Burkholderia glumae LMG 2196 = ATCC 33617
Brite
KEGG Orthology (KO) [BR:
bgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgu03019
]
KS03_3275 (hrpA)
Enzymes [BR:
bgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KS03_3275 (hrpA)
Messenger RNA biogenesis [BR:
bgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KS03_3275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
NACHT
AAA_23
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJY65522
LinkDB
All DBs
Position
I:complement(3585987..3590087)
Genome browser
AA seq
1366 aa
AA seq
DB search
MPPAEQVPREGGEGPESRAPRAGQPARAARPSREPRAARPPVTPNPVPPLSFPESLPVSA
KREEIARAIADHQVVIVCGETGSGKTTQLPKICLALGRGLGAGGRGLIGHTQPRRLAASS
TGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLRAYDTLIID
EAHERSLNIDFLLGYLRQILPKRPDLKLIVTSATIDADRFARHFGSPTRPAPVIEVSGRL
YPVEIRYRPIADERSAAVRNAEGAASGRDRQKTAREAERDLMDGIVDAVDELCREGPGDV
LVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAADQERVFKGSNARRIVLATNVAET
SLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGICIRLYE
DADYAGRARFTDPEILRSSLASVILRMKSLHLGSVESFPFIEPPPGRAIADGYQLLNELG
AVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREVLIIASALSVQDPRDRPIEAQ
EQADQAHRRFADERSEFLQWLKIWAWFEEAVAHKKSNRQLVDACRANFLSHLRLREWRDV
HSQLLTVVREHGWRLNETEATFEQIHLSLLTGLLGNIGMKADDEPHYLGARNIKFHLWPG
SALAKKAGRWVMAAELVETSRLYARCIAKIEPEWIEKVGAHLLKTALSEPHWEKRPAQVS
AFERGTLYGLTIYHRRRVAFGRQDPARARELFIRGALVDGEFDTRLGFFAHNRKLLADIE
QLEHKSRRQDVLVDDALIYGFYDQAIPAGIHTGAAFERWYRDELKASGQPEDKLRLLYLS
RDDLMRHEAAGVTTDLFPKRLTMAGVEMALSYHFEPGSPRDGVTLQVPLFALNQVDARRA
EWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPDYAAGFVERAGAERFGAGALLDVLIADVR
GQTQIAMRASDFKLETLPAHLFMNFKVIDEHGRQLAMGRNLAQLRGELGAQAQQHFQKIA
AATLAPAGEAADGAPLAAGAAGSPGAAAGQRGPGGPGGRPVPPRSVPAASPAAGGEAAGA
ATALYENLTTWNFGKLPELLEIRRRGQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAG
LRRLFALQLKEPIKYLEKNLPGLREMAMQYMALGSQDELRDQLIDTALDRACLQDPLPDD
DASFHTRRDEGRSRLNLLAQEIARLVGQILAEYAGLTKKLAQAKSFGAAHADMVAQLGAL
VGKRFVIDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQLAELAPLAQHYQRALSQRG
GAADGRLTEFRWLLEELRISLFAQELRTPMPVSVKRLHKVWESLQR
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgccgccagccgagcaggtgccgcgcgaaggcggcgaaggccccgaaagccgcgccccg
cgcgccggccagccggctcgcgcggcccgcccgtcgcgcgagccgcgcgccgcgcgcccg
cccgtcacgccgaacccggttccgccgctcagctttcccgagagcctgcccgtctccgcc
aagcgcgaggagatcgcgcgcgcgatcgccgaccaccaggtggtgatcgtctgcggcgag
accggctcgggcaagaccacccagttgccgaagatctgcctcgcgctcggccgcgggctc
ggcgcgggcggccgcggcctgatcggccacacccagccgcgccggctggccgcgtcgtcc
accggccgccggatcgccgaggaactcggcacgccgttcggcgaggtggtcggctacaag
gtgcgttttaccgacaacctggcaccgggcgcctcggtcaagctgatgaccgacggcatc
ctgctcgccgagacgcagaccgatccgctgttgcgggcgtatgacacgctgatcatcgac
gaggcgcacgagcgcagcctcaacatcgatttcctgctcggctacctgcgccagatcctg
cccaagcggccggacctgaagctgatcgtgacctcggcgaccatcgacgcggaccgcttc
gcgcgccacttcggcagcccgacgcggccggcgccggtgatcgaggtgagcggccggctc
tatccggtggagatccgctaccggccgatcgccgacgagcgctccgccgccgtgcgcaac
gccgagggcgccgcgagcgggcgcgaccgccagaaaacggcgcgcgaggccgagcgcgac
ctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgaggggcccggcgacgtg
ctggtgttcctgcccggcgagcgcgagatccgcgatgcggccgaggcgctgcgcaagcac
catccgccgcacaccgagatcctgccgctgttcgcgcggctgtccgcggccgaccaggag
cgcgtgttcaagggctcgaacgcgcgccgaatcgtgctggccaccaatgtcgccgagacc
tcgctgacggtgccgggcatccgctacgtggtcgataccggccttgcgcgcgtcaagcgc
tattcgtaccgcaacaaggtcgagcagctgcaggtggagtcgatctcgcaggccgccgcc
aaccagcgtgcgggccgctgcgggcgcgtggccgacggcatctgcatccgtctctacgag
gacgccgactacgccggccgcgcgcgcttcaccgatcccgagatcctgcgctcgtcgctg
gcctcggtgatcctgcgcatgaagtcgctgcatctcggctcggtcgaatcgtttccgttc
atcgagccgccgccgggccgcgcgatcgccgacggctaccagctgctcaacgagctcggc
gcggtggacgacgacaacgcgctcaccccgctcggccgcgagctggcgcgcctgccgctc
gacccgcgggtggggcgcatgatccttgccgcgcgcgaccagcaggcgctgcgcgaggtg
ctgatcatcgccagcgcgctgtcggtgcaggacccgcgcgaccggccgatcgaggcgcag
gagcaggccgaccaggcgcatcgccgcttcgccgacgagcgttccgaattcctgcaatgg
ctgaagatctgggcctggttcgaggaggcggtcgcgcacaagaaatcgaaccggcaactg
gtggacgcctgccgcgcgaacttcctctcgcacctgcggctgcgcgagtggcgcgacgtc
cactcgcaactgctgaccgtggtgcgcgagcacggctggcgcctgaacgagaccgaggcg
accttcgagcagatccacctgtcgctgctcaccggcctgctcggcaacatcggcatgaag
gccgacgacgagccgcactacctgggcgcgcgcaacatcaagttccacctgtggccgggc
tcggcgctcgccaagaaggccgggcgctgggtgatggccgccgagctggtcgagacgagc
cggctctacgcgcgctgcatcgcgaagatcgagcctgagtggatcgagaaggtgggcgcg
cacctgctgaagacggcgctgtccgagccgcactgggagaagcgcccggcgcaggtcagc
gcgttcgagcgcggcacgctctatggcctcacgatctaccaccgccggcgcgtggcgttc
ggcaggcaggacccggcgcgcgcgcgcgagctgttcatccgcggcgcgctggtggacggc
gagttcgacaccaggctcgggttcttcgcgcacaatcgcaagctattggccgacatcgag
caactggagcacaagtcgcgccgccaggacgtgctggtggacgacgcgctgatctacggc
ttctacgaccaggcgatcccggccggcatccataccggcgccgcgttcgagcgctggtat
cgcgacgagctgaaggcgagcggccagcccgaggacaagctgcggctgctctacctgtcg
cgtgacgacctgatgcgccacgaggcggccggcgtgaccaccgacctgttcccgaagcgg
ctgaccatggccggcgtggagatggcgctgtcctatcacttcgagccgggttcgccgcgc
gacggcgtcacgctgcaggtgccgctcttcgcgctgaaccaggtggacgcgcggcgcgcc
gaatggctggtgcccggcatgctgaaggagaaggtgcagctgctgctgaaatcgctgccg
cagaagctgcgccgccactgcgtgccgctgcccgactacgcggccggcttcgtcgagcgc
gccggggccgagcgcttcggcgccggcgcgctgttggacgtgctgatcgccgacgtgcgc
ggccagacccagatcgcgatgagggcgtcggacttcaagctcgagacgctgcccgcgcac
ctgttcatgaacttcaaggtgatcgacgagcacggccgccagctcgcgatggggcgcaac
ctcgcgcaactgcgcggcgaactcggcgcgcaggcgcagcagcacttccagaagatcgcg
gcggccacgctcgcgccggccggcgaggccgccgacggtgcgccgctggcggccggtgcg
gcgggcagccccggcgccgcggccggccagcgcggtccgggcggcccgggcgggcgtccg
gtgccgccgcgcagcgtgccggccgcgagccccgccgccggcggcgaagcggccggcgct
gcgaccgcgctctacgagaacctgaccacctggaacttcggcaagctgcccgagctgctc
gagatccgccggcgcggccagacgctgtacggctacccggcgctcgtcgatcgcggcacg
cattgcgacgtcgaggtgttcgattcgcccgaggaagccgcgcgcatccaccgcgccggg
ctgcgccggctgttcgcgctgcagctcaaggagccgatcaagtacctggagaagaacctg
ccggggctgcgcgagatggcgatgcagtacatggcgctcggctcgcaggacgagctgcgc
gaccaactgatcgacaccgcgctcgaccgcgcctgcctgcaggacccgctgcccgacgac
gacgcgagcttccacacgcgccgcgacgagggccgcagccgcctcaacctgctcgcgcag
gagatcgcgcgtctggtcgggcagatcctcgccgaatatgccgggctcaccaagaaactg
gcgcaggcgaagtcgttcggcgccgcccatgccgacatggtcgcgcaactgggcgcgctg
gtcggcaagcgcttcgtgatcgacaccccatacgcgcagctcgcgcatttcccgcgctac
ctgaagggcatcgcgctgcgcatcgacaagctcaaggccgatccggcccgcgacgcacgc
cagctcgccgagctcgcgccgctcgcgcagcactaccagcgggcgctgtcgcaacgcggc
ggcgcggccgacgggcggctcaccgagttccgctggctgctggaggaactgcgcatttcg
ctgttcgcgcaggaactccgcacgccgatgccggtctccgtcaagcggctgcacaaggtc
tgggagtcgctgcagcgctag
DBGET
integrated database retrieval system
