Burkholderia glumae LMG 2196 = ATCC 33617: KS03_5404
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Entry
KS03_5404 CDS
T03820
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bgu
Burkholderia glumae LMG 2196 = ATCC 33617
Pathway
bgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KS03_5404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgu03019
]
KS03_5404
Enzymes [BR:
bgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KS03_5404
Messenger RNA biogenesis [BR:
bgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KS03_5404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJY62753
LinkDB
All DBs
Position
II:complement(2581231..2582616)
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AA seq
461 aa
AA seq
DB search
MSFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLL
QRLVQQGPAVSSNRARVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRR
QTLLFSATFPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLA
EHGWQHALVFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSAAGELIKKPKKPKQPKTPQARPGGVPPAGAKPRAP
GAPGKRKAAPRAGAAGNVTDGSPFSVRKPRGKGAGKPRATR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctcgcttggcctgatcgaaccgttgctgcgtaacctgcgcgaactcaat
tacgcggagcccacgccggtgcaggccagggcaattccggccgtgctcggcggcaaggac
gtgctggccgcggcgcagaccggcaccggcaagaccgccggcttcgcgctgccgctgctg
cagcggctggtgcagcagggccccgcggtgtccagcaatcgtgcccgcgtgctggtgctg
gtgcccacccgcgaactggccgaacaggtgctgcaaagcttcgccgactacggctgcggc
ctcgagttgcgcatgctggccgcctatggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtggacgtgctggtcgccacgccgggccggctgctcgatctgaaccgg
cagaacgcggtgcagttcgaccaggtgcgcaccctggtgctggacgaagccgaccgcatg
ctggacctcggcttcgcccgcgaactcgatgccgtgttcgccgccctgcccacccggcgc
cagacgctgctgttctccgccacgttccccgacgagattcgcgcgatggccgcgaagcgc
ctgcacgagcccgtccagatcagcgtcagcgcgcccaatgccacggccagccgggttcgg
cagtgggtggtgacggtggacaaacgcaacaagcccgagcttttcatgcacctgctggcc
gagcacggctggcagcacgcgctggtgttcgccaggacccgtgccggcgtcgattatctg
gcggcccggctggaggcggcgggccacgcggtcgatacgatccatggcgacaagccgcag
cccgcgcgcctgcgcgcgctggagcgcttcaagcgcggcgaggtgcggatgctggtcgcc
accgacgtggcggcgcgcggcctcgatatcgacgatctgccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaggactacgtgcatcggatcggccgcaccggccgcgccggcgcg
agcggcgtggcggtgtcgctggtatgtgccgacgaggcgccgcaactggccgcgatcgag
gcgctgatccggcaaacgctgcggcgcgaggaggagccgggtttcgaagccgagcaccgc
gtgccgcaaaccagcgccgccggcgagctcatcaagaagccgaaaaagcccaagcagccg
aagacgccgcaagccaggccgggcggtgtgccgccggccggcgccaaaccgcgtgcgccg
ggcgcgccgggcaagcgcaaggcggcgccgcgtgcgggcgcggccgggaacgtcaccgat
ggcagtccgttcagtgtgcgcaagccgcgcggcaagggggccggcaagccgcgcgctacc
cgctga
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