Bordetella genomosp. 8: CAL12_01560
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Entry
CAL12_01560 CDS
T09515
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CAL12_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgv03400
]
CAL12_01560
Enzymes [BR:
bgv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CAL12_01560
DNA repair and recombination proteins [BR:
bgv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CAL12_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ARP79641
UniProt:
A0A1W6YF25
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All DBs
Position
335058..339215
Genome browser
AA seq
1385 aa
AA seq
DB search
MAGNSSRWRSPGCAPCARPCMRTATAPRRPRMDRRPRMVESRHIHGKSRSEPGTATSRDA
APTPLDVLRFPLHGSRLIEASAGTGKTYTIATLYVRLVLGHGGDDGFDRPLMPPQILVVT
FTEAATQELRDRIRARLAQAAAYFLADPAEAEAAGDGDPLHDLRAEYPPETWAACARKLQ
LAVEWMDEAAVSTIHGWCNRMLREHAFDSNSLFQQTLEQNTAPLMAEVVRDYWRAHIAPL
DAVSAAEVRAWWPGPDALQAQLLPVLRFAPELKAPGKTAMADGLDAADITAPRHASQNSG
SGGGTAARRHANDADADAGTPCDLLRTVRERRQGVLRELKQPWQAWLPELRQLFDEGVAA
KRVNGRQVQARYYQAWLENLRAWCEDADARMPQLTDTAWLRLGPGLSEAWKGDPPDHPAF
VALAELREKTQALPEARHDVLRHAAEWVSRRFASEQAQRAQMSFDALLDQLDAALAGPSG
ATLADTLRKQFPVALIDEFQDTDPVQYRIFDAVYRVAANDRGSALILIGDPKQAIYGFRG
ADIHTYLRARAAVDGRLYVLGTNFRSTQPMVDAVNHCFMAAERREAGDGAFLFRRGDGNP
VPFIPVRANDRPDRLVLDGAATPALTMWWLPASEDGKAMGAGVYLDTMADACAGEVARLL
ALSQAGGAGFVPRDQAVPPPEGDALGARPLRPADIAVLVDTGRQARAVRRALSRRGVRSV
YLSERQSVYASAQAGEIEFWLRACAEPDDARALRAALATPTLGVAWQDLDRIGQDELEWD
ARVQQFRAYARCWRDKGVLPMLRRLLDDFGVPARLLAPVAATGDGERAMTDILHIAELLQ
QASVRLDGEHALLRHLAEMRHAASVGEENDALTIRLESDADLVRVITVHKSKGLEYPLVF
LPYAAAFRAVRPDAVPLSWHDDHGRLQVSLVPDAHGHARADRERLGEDLRKLYVALTRAR
YATWVGVAPIANLESSAIGYLVGRGLAPADQPLPEVLDTWRAGHADIAVREAPPPADIRY
RPESERTGPTQAAAAAPGVAMEHAARHVTASPGGARIMRRGVRDPWWIASYSSLRTATGD
RVKEAEPETAREDVFLEATGTDTDVDGAGDADTMPAWPANRLPPAIPLPRDAGGALHAFP
AGAQAGTFFHELLEWAADQGFAAIADQPEAVRQAVARRCEEHNWAAWTEPLTAWLLDTVA
RPMALPDMPGGPVPPVALAGIGDYLAEMEFWLGADDVDVTRLDHVVRAHTLRQAPRQALE
PARMNGMLKGFIDLVFEHQGRYYVLDYKSNRLGEDDAAYTQAAMRDAILEHRYELQYALY
LFALHRLLRARLPDYDYDRHVGGAAYVFLRGTHAAQGGVFVERPPAALMHALDRLFAPHV
REEAA
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaattcttcgcgctggcgcagtcctggctgcgcgccatgcgcgcgtccctgt
atgcggaccgcaaccgcgccaaggcggccacggatggacaggaggccgcgcatggttgag
tcccggcacatccacggcaagtcccgatccgagccgggcacggccacgtcgcgcgatgcg
gcgcccacgccgctggacgtcctgcgctttccattgcatggcagccgcctgatcgaggcc
agcgccggcaccggcaagacctacaccatcgccaccttgtatgtacgcctggtgctgggg
catgggggcgatgacggcttcgaccggcccctgatgccgccgcagatcctggtggtgact
tttaccgaagccgccacgcaggaactgcgcgaccgcatccgcgcgcggctggcccaggcg
gccgcgtatttcctggccgatccagccgaagccgaagccgcgggcgacggcgatcccctg
cacgacctgcgcgccgagtatccgccggaaacctgggcagcctgcgcgcgcaagctgcaa
ctggccgtggagtggatggatgaagccgccgtgtcgaccatccacgggtggtgcaaccgc
atgctgcgcgagcatgccttcgacagcaacagcctgttccagcagacgctggaacagaac
acggcgccgctgatggcggaggtcgtgcgcgactactggcgcgcgcacatcgcgccgctg
gacgcggtgtcggcggcggaagtgcgggcctggtggccggggcccgatgcgctccaggcg
caattgctgcccgtactgcgcttcgcgccggaattgaaggcgcctggcaagaccgccatg
gcggatggcctcgatgccgcggatatcacggccccacggcacgccagccaaaacagcggc
agcggcggcggtaccgccgcccggcggcatgccaacgatgctgatgctgatgccggtaca
ccctgcgacctgctgcgcactgtgcgcgagcgtcgccagggcgtattgcgcgaactgaag
cagccctggcaggcatggctgcccgaactgcgccagctgttcgatgaaggggtggcggcc
aagcgcgtgaacggacgccaggtccaggcccgctactaccaggcctggctggagaatctg
cgggcatggtgcgaggacgccgatgcccgcatgccgcaattgaccgacaccgcctggctg
cgcctgggcccgggcctgagcgaagcgtggaagggcgatcccccggatcatccggccttt
gtcgccctagccgagctgcgcgaaaaaacccaggcgctgcccgaagcgcgccatgacgtg
ctgcgccacgccgccgagtgggtgagccggcgcttcgcgtccgaacaggcgcagcgcgcg
cagatgagcttcgacgccctgctggaccagctggacgccgcgttggcggggccatccggc
gcgaccctggccgacacgctgcgcaaacagtttcccgtcgcgctgatcgacgaattccag
gataccgatccggtccagtaccgcatcttcgacgccgtctaccgcgtggccgccaacgac
aggggcagcgcgctgatcctgatcggcgatcccaagcaggccatctacggctttcgcggc
gccgacatccatacctatctgcgcgcgcgcgccgcggtggacggtcgcctgtacgtgctc
ggcacgaatttccggtccacgcagcccatggtggatgcggtgaatcattgcttcatggca
gcggaacggcgggaagcgggcgatggggcattcctgttccgccgcggcgatggcaacccg
gtgcctttcatccccgtgcgcgcgaacgatcgccccgatcgcctggtgctggacggcgcg
gccacgccggccttgacgatgtggtggctgccggcgtccgaggatggcaaggccatgggc
gcgggtgtgtacctggacaccatggccgacgcctgcgccggcgaggtcgcgcggctgctg
gccttgagccaggcgggcggcgcgggcttcgtcccgcgcgaccaggccgtgccgcctccg
gagggtgacgcacttggcgcgcggccgctgcgtcccgccgacatcgccgtgctggtcgat
accggccggcaggcgcgcgccgtgcgccgcgccctgtcgcgccgaggtgtgcgcagcgta
tacctgtccgagcggcaatccgtgtatgccagtgcccaggccggcgaaatcgaattctgg
ctgcgcgcctgcgccgagcccgacgatgcccgcgcgctgcgcgcggcgctggccacaccc
accctgggcgtggcatggcaggacctggaccgcatcggccaggacgaactggaatgggac
gcgcgcgtgcagcaattccgcgcctacgcacgctgctggcgcgacaagggcgtgctgccg
atgctgcggcggctgctggacgatttcggcgtgcccgcgaggctgctggcgccggtcgcc
gctaccggcgacggcgaacgcgcgatgaccgacatcctgcacatcgccgagctgctgcaa
caggcgagcgtgcggctggacggcgaacacgcgctgctgcggcatcttgcggaaatgcgc
catgcggccagcgtgggcgaagaaaacgacgccttgaccatccgcctggaaagcgacgcc
gacctggtgcgcgtgatcaccgtccacaaatccaagggcctggaatatcccctggtcttc
ctgccttacgcggccgcgttccgcgcagtcaggccggatgccgttcccttgtcctggcac
gacgaccacggccggctgcaggtgtcgctggtccccgacgcgcacggccacgcccgcgcg
gatcgcgaacgcctgggcgaggacctgcgcaaactgtatgtcgcgctgacccgtgcccgc
tatgccacctgggtcggcgtcgcgcccatcgccaacctggaatccagcgccatcggctat
ctggtggggcgcggcctggcgcccgccgaccagcccctgccggaggtgctggacacctgg
cgcgccggccacgctgatatcgccgtgcgcgaagcgccgccgcccgcggacatccgctac
cggccggagagcgaaaggaccggcccgacgcaggccgcggctgccgcgcctggcgtggcc
atggaacacgccgcgcgccacgtcacggcctcgccaggcggcgcgcgcatcatgcgccgc
ggcgtgcgcgatccgtggtggatcgccagctactcctcgctgcgtaccgccacgggcgac
cgcgtcaaggaagccgagccggagaccgcgcgcgaagacgtgttcctggaggccaccggc
acggacaccgacgtcgatggcgcgggtgacgcggacacgatgccggcctggcccgccaac
cgcctgccgccggcgatcccattgccgcgcgacgccggcggcgccctgcacgcgttcccc
gccggcgcgcaggccggcaccttcttccacgagctgctcgaatgggccgccgaccagggc
ttcgccgccatcgccgaccagccggaagcggtgcgccaggcggtggcgcgccgctgcgaa
gagcacaactgggccgcctggaccgagcccttgacagcctggttgctggacacggtggcc
agacccatggcgctgcccgacatgccgggcggcccggttcccccggtggcgctcgcgggc
atcggcgactaccttgccgaaatggaattctggctgggcgccgacgacgtcgacgtcacg
cgcctggaccacgtcgtgcgcgcacacacgctgcggcaggcgccgcggcaggcgctcgaa
ccggcgcgcatgaacggcatgctgaagggcttcatcgacctggtgttcgagcaccagggc
cgctattacgtgctggactacaaatccaaccgccttggcgaggacgacgcggcgtacacg
caggccgccatgcgcgacgccatactggaacaccgctacgagctgcagtacgcgctatat
ctgttcgccctgcatcggctgctgcgcgcgcggcttcccgactacgactatgaccggcac
gtcggcggcgccgcctatgtattcctgcgcggcacgcacgcggcgcagggcggcgtcttc
gtggagcgtccgcccgccgcgctgatgcatgcgctggaccggctgttcgccccgcatgtg
cgcgaggaggcggcctga
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