Bordetella genomosp. 8: CAL12_05555
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Entry
CAL12_05555 CDS
T09515
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL12_05555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgv03019
]
CAL12_05555
03400 DNA repair and recombination proteins [BR:
bgv03400
]
CAL12_05555
Enzymes [BR:
bgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAL12_05555
Messenger RNA biogenesis [BR:
bgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAL12_05555
DNA repair and recombination proteins [BR:
bgv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CAL12_05555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Tuberculin
Motif
Other DBs
NCBI-ProteinID:
ARP80351
UniProt:
A0A1W6YH40
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All DBs
Position
1226427..1228253
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AA seq
608 aa
AA seq
DB search
MSDPRALEVLRRVFGYESFRGEQQAIVDHVIQGGDALVLMPTGGGKSLCYQVPSLVREGT
GVVVSPLIALMQDQVDALTELGVRAAFLNSTQDWRVARDVERAFLDGELDLLYVAPERLL
TDRCLDLLDRGRIALFAIDEAHCVSQWGHDFRPEYMGLSLLHERWPQVPRIALTATATAA
TRTEIAQRLALDEAHHFVASFDRPNIRYRIVEKNEVRKQLLDMISTEHAGDSGVVYCLSR
ARVEETAEFLCNNGVQALPYHAGLGATVRAANQSRFLREDGIVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPATAWLAYGLQDVVQQRRMIDESPGDEVFKRRLG
QQLDAMLGLCETVECRRVRLLAYFGQQIGACGNCDVCLDPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKATDRVNQYGHQTLSVFGVGADLSDSAWRGVLRQLLAQGLL
AVDHEGYGTLALTEASRAVLKGERQLMLRRESPKAARAAKSAGTRGRAPAVELPAEAQPV
FEALRAWRAGVARNHGVPAYVIFHDATLREIALARPDTADELGGISGVGARKLEAYGDEI
LECVAGFA
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccgcgcgccctggaagtcctgcggcgcgttttcggctacgaatctttccgc
ggcgaacagcaggccatcgtcgatcatgtgatccagggtggcgatgcgctcgtcctgatg
ccgaccggcggcggcaagtcgctgtgctaccaggtgccctcactggtgcgtgaaggcacc
ggcgtggtggtgtcgccgctgatcgcgctgatgcaggatcaggtggatgcgctgaccgaa
ctgggtgtgcgtgccgcttttttgaattccacgcaggattggcgtgttgcccgcgacgtc
gagcgcgccttcctggatggagagctcgatctgctctacgtcgcgccggaacgcctgctg
accgaccgctgcctggacttgctggaccgtggccgcatcgcgctgttcgccatcgacgaa
gcgcattgcgtgtcgcagtggggccatgacttccggccggaatacatggggctgtcgctg
ttgcacgagcgctggccgcaggtgccgcgcatcgccctgacggccaccgccaccgccgcc
acgcgcaccgaaatcgcccagcgcctggcgctggacgaagcccaccacttcgtcgccagc
ttcgaccgtcccaacatccgttatcgcatcgtcgaaaagaacgaggtgcgcaagcagttg
ctggacatgatcagcaccgaacacgcgggcgattccggcgtggtgtactgcctgtcgcgc
gcccgggtcgaggaaaccgcggaattcctctgcaacaacggcgtccaggccttgccgtac
cacgccggcctgggcgccaccgtgcgcgcggccaaccagtcgcgcttcctgcgcgaggac
ggcatcgtcatggtggccaccatcgccttcggcatgggcatagacaagcccgacgtgcgc
ttcgtcgcgcacatcgacctgccgaaatcggtggaaggctactatcaggaaaccggacgg
gcgggccgcgatggcttgcccgcgaccgcatggctggcctacggcctgcaggatgtggtg
cagcagcgccgcatgatcgacgaatcgccgggcgacgaggttttcaagcgcaggctgggc
cagcagctggacgccatgctcgggctgtgtgaaaccgtggagtgccggcgcgtgcgcttg
ctggcgtacttcggccagcagatcggcgcctgcggcaattgcgatgtctgcctggacccg
ccgcaggcctgggacggcacggtggcggcgcagaaggtgctgtcggccgtgtaccggctt
tggaaggagcgcggccagcgctacggcgccggccacatcatcgacatcctgcgcggcaag
gccacggatcgcgtcaaccaatacgggcatcagacgctgtcagtattcggggtcggcgcc
gacctgtcggattcggcttggcgcggcgtgttgcggcagttgctggcgcagggactgctg
gccgtcgaccatgaaggctacggcacgctggccctgaccgaggccagccgcgcggtgctc
aagggcgaacggcagttgatgctgcggcgtgaatcgcccaaggcggcgcgtgccgccaag
agcgccggcacgcgcggcagggcgccggcggtggaactgccggccgaggcccagccggtg
ttcgaagcgctgcgcgcctggcgggccggcgtggcccgcaaccacggcgtgcccgcctat
gtgattttccacgatgccacactgcgcgaaatcgccctggcgcgccccgacacggccgac
gagctgggcggcatcagcggcgtgggcgcgcgcaagctggaagcctacggcgacgagatc
ctggagtgcgtggccgggtttgcttga
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