Bordetella genomosp. 8: CAL12_08300
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Entry
CAL12_08300 CDS
T09515
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL12_08300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgv03019
]
CAL12_08300
03009 Ribosome biogenesis [BR:
bgv03009
]
CAL12_08300
Enzymes [BR:
bgv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CAL12_08300
Messenger RNA biogenesis [BR:
bgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAL12_08300
Ribosome biogenesis [BR:
bgv03009
]
Prokaryotic type
rRNA processing factors
CAL12_08300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ARP80841
UniProt:
A0A1W6YIH8
LinkDB
All DBs
Position
complement(1804888..1808187)
Genome browser
AA seq
1099 aa
AA seq
DB search
MKRMLFNATHPEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGIITRIEPGLEACFVNY
GEDRHGFLPFKEIARSYFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLQVPQGMSIIARTAGIGRNVEELQ
WDLSYLMQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDVPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVAV
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEMKTSFELADAPATEVAWAPREQEIKARPEALVKGITPAQPAPVST
APAPAPVAAASAPAAPGLGGLFKRVMGWFTGGEATPAAAEPAQPADARRANTRAKSRTHD
GQDRRGERHGSDRNRNRRHEARPEAAEGEGLRHHVRGGRRGDGERTERNERGERPDRAER
AERGDRPARNADAQQREIIAQAQAHPERALAPETGDDATPARGNRGRRGRGRGRREDQAD
APMSEQESMVAALAETVAAALPPDNADETADNAADMALEADEQGQGADAGNDPERKRRRR
RSRRGRRANEDGSGVNGEAGQDGLAEGDEALASEAQAALSEVATPVQSEQAPRFETTPRA
SSPEDSAQVVTQPTPVQATQPGSMTAQPVAASAPQPIPTVAPVETVAGQDAFVSAPASAP
AAPQVDRAETQPAPAPISTPSSTSVPREAAPVPQPPAQPVPVSTALPAAPSTSPDGAPGA
PVAATAAHEPASQPTPVTPAPVQATPVAQGEPAAAPAAAPAAPSYVAPQASETYKAEPEA
ATVAPTQSPAPAPAQTGSKQNLQDVVNAAGLTWVETDPDRHAQTQQRMAASHTPMRLGRE
RKPVAPVSSSPLVQVETRH
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgttcaatgcaacgcaccctgaagagttgcgcgttgccattgtcgat
gggcagaaactcatcgatctggacatcgaaaccgccggccgcgaacagcgtaaaggcaac
atctacaaaggcatcatcacccgcatcgaaccaggcctcgaggcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatcgcccgcagttatttcaaggaa
ggcgtcgacgtacgcaccgcccgcatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggtggaaaaggaagaacgcggcaacaagggcgccgccctgaccacgttcatttcc
ctggcaggccgctacctggtcctgatgcccaacaacccccgcggcggcggcgtatcccgc
cgggtggaaggcgaggaccggcaggaattgcgcgacaccatggagcagctccaggtgccg
cagggcatgagcatcatcgcccgtacggccggcatcggccgcaacgtcgaagaactgcag
tgggacctttcctacctgatgcagctgtggacggccatcgacggcgccgcccgcgacaat
tccgcccccatcctgatctacctggaatccagcctggtcatccgggcgattcgggactat
ttctcgccggaaatcggcgagatcctgatagataccgacgaaatcgccgatcaggccacg
gcgttcatgagcgtggtgatgccggacaacgtccagcgcgtaaagcgctaccgcgacgat
gttccgctattttcgcgcttccagatcgaacatcagatcgaaaccgcctattcgcgcacg
gtgaccctgccctccggcggcgccatcgtgatcgaccataccgaagcgctggtggccgtc
gatgtgaactccgcgcgctcgacccgcggcgccgacatcgaggaaaccgccctgcgcacc
aaccaggaagcggccgacgaagtggcccgccagttgcgcctgcgcgatctgggcggcctg
atcgtcatcgacttcatcgacatggaagacggcaagaaccagcgtgccgtcgaacagcgc
ctgcgcgatgccctgcatttcgaccgcgctcgtgtgcagatgggcaagatctcgcgcttc
ggcctgatggaattgtcgcggcagcgcctgcgcccggccctgaacgaaggctcccacatc
acctgcccgcgctgcaatggcaccggcgtgatccgtgacgccgagtccagcgccctgcac
gtcctgcgcctgctgcaggaagaagccatgaaggaaaacaccgccgccgtgcacgcacag
gtgccggtcgacgtggccaccttcctgctgaacgaaaagcgcgccgacatcgccaagatg
gaagcccgcctgaaggtcaacctggtgctgatccccaacaagcatctggaaacgccgcat
caccatatcgaacgtctgcgccacgacgacccgcggctggaggaaatgaagaccagcttc
gagctggccgacgcgcccgccaccgaagtcgcctgggcgccccgcgaacaggaaatcaag
gcccgccccgaagcgctggtcaagggcatcaccccggcccagccggcgcccgtgtccacc
gcgcccgcgccggccccggtggctgccgcatcggcccccgccgcgcccggcctgggcggc
ctgttcaagcgcgtgatgggttggttcaccggcggcgaagccacgcccgccgcggcggaa
cccgcccagccggcggacgcccgtcgggccaatacgcgcgccaagtcgcgcacccacgac
ggccaggatcgccgcggcgaacgccacgggtccgaccgcaatcgcaaccgccggcatgaa
gcccgtccggaagcggccgaaggcgaaggcctgcgtcaccacgtgcgcggcggacgccgc
ggcgatggcgagcgcaccgaaaggaacgaacgcggcgaacgtccggatcgcgccgaacgc
gcggaacgcggcgaccgccccgcccgcaacgccgacgcccagcagcgtgagatcattgcc
caggcccaggcgcatcccgagcgcgccctggcgccggaaaccggcgacgacgccacaccc
gcccgcggcaatcgcggacgccgtggccgtggacgcggccgccgcgaggaccaggccgac
gctcccatgagcgagcaggaaagcatggtcgcggccctggctgaaaccgtggccgccgcg
ctcccgcccgacaacgccgacgaaacggccgacaacgccgcggatatggcgctggaagcc
gacgagcaaggccaaggcgcggacgcgggcaacgatcccgagcgcaagcgccgccgccgt
cgcagccgccgcggccgccgtgccaacgaggacggttccggcgtgaacggcgaagccggc
caggacggcctggcggaaggcgacgaagcactggcctcggaagcccaggccgcgctgtcg
gaagtggccaccccggtccagtccgagcaagcgccgcggttcgaaacgacgccgcgcgcc
agcagccctgaagactcggcccaggttgtcacccagcccacgcccgtgcaggccacccag
cccggctcgatgacggcgcagcccgtcgcggccagcgctccccagcccatccccacggtg
gcgccggtggagacggtcgccggccaggatgcgtttgtctcggcgcctgcttcggccccc
gcggcaccgcaggtcgaccgcgctgaaacgcaaccggcccccgctccgatcagcaccccg
tccagcacgtccgtgccgcgggaggccgcgcccgtcccgcaaccgcccgcgcagccggtg
ccggtcagcaccgccttgcccgcggcgccgtccacgtcgcccgatggcgcgccgggcgct
cccgtcgcggccacggccgctcacgaaccggcctcccagcccacacccgtgacgcctgct
cccgtccaggcgacgccggtcgcgcaaggcgagcctgccgccgcgcctgccgccgcgcct
gccgccccatcgtacgtggcgccgcaggcgagcgaaacgtacaaggcggagcctgaggcc
gccaccgttgcgccgactcagtcccctgcgccggcgcccgcgcaaacgggttcgaagcaa
aacctgcaggacgtcgtcaatgccgccggcctgacctgggtggagaccgatccggatcgc
cacgcccagacccagcagcgcatggccgccagccatacgcccatgcgcctgggccgcgag
cgcaagcccgtggcgccggtgtcgtcttcgccgctggtccaggtggaaacgcgccactaa
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