Bordetella genomosp. 8: CAL12_09065
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Entry
CAL12_09065 CDS
T09515
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL12_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgv03021
]
CAL12_09065
03019 Messenger RNA biogenesis [BR:
bgv03019
]
CAL12_09065
Transcription machinery [BR:
bgv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CAL12_09065
Messenger RNA biogenesis [BR:
bgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CAL12_09065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
ARP80974
UniProt:
A0A1W6YJ00
LinkDB
All DBs
Position
complement(1973631..1974887)
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AA seq
418 aa
AA seq
DB search
MHLNELKAQHVSKLLELAASLEIENANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPD
GFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GLPPEAIKHRIMFENLTPLHPNQAMRLERDIKSEENLTGRILDIFAPIGKGQRGLIVASP
KSGKTVMMQHIAHAITSNFPDATMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQAMEFILDKMRVTKSNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaatgaactaaaggcgcaacacgtctccaaattgctggaacttgccgcctcc
ctggaaatcgagaacgccaaccgcctgcgcaagcaggagctgatgttcgccatcatgaag
aagcgcgccaagcagggcgagcagatcttcggcgacggcgtgctggaagtcctgccggat
ggtttcggtttcctgcgatcgccggatacgtcgtacctggcgagcaccgacgatatctat
atttcgccgtcgcagatccgccgcttcaacctgcataccggcgactcgatcgaaggcgag
gtgcgtacgcccaaggatggcgagcgttatttcgcgctggtaaaggtggacaaggtcaac
gggctgccgccggaagcgatcaagcaccggatcatgttcgagaacctgacgccgctgcat
cccaaccaggcgatgcggctggagcgggacatcaagagcgaggaaaacctgaccgggcgc
atcctggacatcttcgctccgatcggcaagggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcatatcgcgcatgccatcaccagcaacttcccc
gacgccaccatgatcgtcctgctggtggacgagcggccggaagaagtcaccgaaatgcag
cgcacggtgcgcggcgaagtcgtggcgtcgaccttcgacgaaccggccacgcgccacgtg
caggtggcggaaatggtgatcgagaaggccaagcggctggtcgagctgaagaaggacgtg
gtgatcctgctggactcgatcacccgcctggcgcgggcctacaacaccgtggtgccggcc
tccggcaaggtgctgacgggcggcgtggacgccaatgcgctgcagcggcccaagcgcttc
ttcggcgcggcgcgcaacgtggaagaaggcggctcgctgaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgaagtcatctacgaagaattcaagggcaccggcaac
tcggaagtgcacctggaacgccgtctggcggaaaagcgcgtctacccgtccatcaacctg
aacaagtcgggcacgcgccgcgaggaactgctgatcaagcccgagctgctgcagaaggtc
tgggtgctgcgcaagttcatccacgacatggacgaaatccaggccatggaattcatcctg
gacaagatgcgcgtgacgaagtcgaacgccgaattcttcgacatgatgaagaagtag
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