Bordetella genomosp. 8: CAL12_09295
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Entry
CAL12_09295 CDS
T09515
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CAL12_09295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgv03021
]
CAL12_09295
Transcription machinery [BR:
bgv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CAL12_09295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
ARP81019
UniProt:
A0A1W6YJ76
LinkDB
All DBs
Position
2026059..2028314
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AA seq
751 aa
AA seq
DB search
MTKSIGKTSSAVEMAEEAKTARRAASKAAEKTSAKAAVKVAPKSAAVKTPAAKKAAKADT
PEKAAKAKKAEDKLAELVGRPASVPSGRRPGRPAKNQNNDDADFGDAGDGEGEVLPELKP
VKRGGKRGKGDPKDLIARGPVSAEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLV
DAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFG
RTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHVTRVR
ESQAQIDEVVDGLVDPEDGEEYAGAGVTAEEDENDDGPAGGMSSKQLEDLRVKALAKFDE
VAKQFEKMRSAYEQNGYRSDAYLKAQEAIQNELMGIRFTAKMVERLADTLRNQVEEVRQL
ERAVLHTCVDRAGMPRSHFIKVFPGNETNLQWVVEEVAAGHPYAETLERQVPAVQELQQK
LIDLQARVVLPLKDLKEVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLD
LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKM
NRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFI
EDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVT
RERIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccatcggcaaaacctcctctgcagttgaaatggccgaagaagccaaaacg
gccaggcgcgctgccagcaaggcggcggaaaagacatcggccaaagcggccgtcaaggtt
gcgcccaagtccgctgccgtgaagacgcccgccgcgaagaaagccgccaaggcggatacg
cccgagaaggccgcgaaggcgaagaaagccgaagacaagctggccgaactggtcggtcgc
cccgcgtccgtgcccagcggccgccgccccggccggcccgccaagaaccagaacaacgac
gatgccgacttcggcgacgccggtgacggcgaaggcgaagtgttgcccgagctcaagccg
gtcaagcgcggcggcaagcgcggcaagggcgatcccaaggatctgatcgctcgcggtccc
gtcagcgcggaagaatacgaagcgcgccgcaaccgcctcaagcagctcatcaagctgggc
aaggaccgcggctacctgacctacggcgaaatcaacgatcatctgcccgatgacctggtt
gacgccgaagccatcgacggcatcatcagcaccttcagcgacatggggatcgcggtctac
gaccaggccccggacgccgaaacgctgctgatgagcgaaaacgcgccggtcgcgtccaac
gacgatgacgtcgaggacgaagccgaagccgcgctgaccacggtggattccgacttcggc
cgcaccaccgatcccgtccgcatgtacatgcgtgaaatgggttcggtcgagctgctgacg
cgcgaaggcgaaatcgaaatcgccaagcggatcgaggatggcctgaagcacatggtcatg
gcgatctccgcctgcccgaccacgatcaacgaaatcctggcccacgtcacccgcgtgcgt
gaaagccaggcgcagatcgacgaagtcgtcgacggcctggtcgatccggaagacggcgag
gaatacgccggcgccggcgtcacggctgaagaggacgagaacgacgacggtccggccggc
ggcatgagcagcaagcagctggaagacctgcgcgtcaaggcgctcgccaagttcgacgaa
gtcgccaagcaattcgaaaagatgcgctcggcctacgaacagaacggctatcgttccgac
gcctacctgaaggcgcaggaagccatccagaatgaactcatgggcatacgcttcaccgcc
aagatggtggagcgtctggccgacaccctgcgcaaccaggtcgaggaagtgcgccagctg
gaacgcgccgtcctgcacacctgcgtggatcgcgccggcatgccgcgctcgcacttcatc
aaggtgttccccggcaacgaaaccaacctccagtgggtggtggaagaagtcgccgcgggc
catccgtacgccgaaaccctggaacgccaggtgccggctgtgcaggaactgcagcagaag
ctgatcgacctgcaggcgcgcgtggtcctgcccttgaaggatctgaaggaagtcaacaag
cgcatggccaccggcgaagccaaggctcgcaaggccaagcgcgaaatgaccgaggccaac
ctgcgtctggtgatttccattgccaagaagtacaccaaccgtggcttgcaattcctggat
ctgatccaggaaggcaacatcggcttgatgaaggcggtggataagttcgaataccgtcgc
ggctacaagttctccacgtatgccacgtggtggatccgccaggccatcacgcgttcgatc
gccgaccaggccaggaccatccgtatcccggttcacatgatcgaaacgatcaacaagatg
aaccggatcagccgccagatcctgcaggaaacgggcgccgagcccgatcccgcgaccctg
gcgcagaagatggacatgccggaagacaagatccgcaagatcctgaagatcgccaaggaa
ccgatctccatggaaacccccatcggcgacgacgacgattcgcacctgggcgatttcatc
gaagatacggcgacgctggcgccttccgatgccgcgctgcatggttccatgcgcgacgtc
gtcaaggaagtgctagactctctgactccgcgcgaggccaaggtcttgcgcatgcgcttc
ggcatcgaaatgagcaccgatcagacgctggaagaagtcggcaagcaattcgacgtcacc
cgcgaacggatccgccagatagaagccaaggccttgcgcaagctgcgtcatcccagccgt
gccgacaagctcaagagcttcctggaaggccaataa
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