Bordetella genomosp. 8: CAL12_17995
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Entry
CAL12_17995 CDS
T09515
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bgv
Bordetella genomosp. 8
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgv03019
]
CAL12_17995
Enzymes [BR:
bgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CAL12_17995
Messenger RNA biogenesis [BR:
bgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CAL12_17995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
AAA_25
TsaE
ResIII
PhoH
DUF1993
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ARP82520
UniProt:
A0A1W6YN48
LinkDB
All DBs
Position
complement(3952876..3956856)
Genome browser
AA seq
1326 aa
AA seq
DB search
MTVKPQTPSRRGRGAPGAGSPSVPASPASSATAATAASRASAASAARPAATPRVIPPIRY
PEDLPVSARRDEIARAIQDHQVVIVSGETGSGKTTQLPKICLDLGRGRTRMIGHTQPRRL
AATSVARRIAEELDTPLGEIVGYQVRFNDRTGPNAAVKLMTDGILLAETQRDPLLKRYDT
LIIDEAHERSLNIDFLLGYLKRVLPRRPDLKVIITSATIDAERFARHFAAEPERPAPVIE
VSGRLYPVEVRYRPVRPEETEEAAASRSARERAGDEERDLVDAIVDAVDECARHGPGDVL
VFLPGEREIREASEALRKRHPAATEVLALYARLSQAEQEQIFRPRGSGRRVVLATNVAET
SLTVPGIRFVVDSGLARVKRYSWRNKVEQLRIEPISRASANQRAGRCGRVGPGVCIRLYD
EADFNARAPFTDPEVLRSSLASVILRMKSLKLDDIEDFPFVEAPPGRAIADGYHLLQELG
AIEPVQRAEAQETDARDDATGPAFALTRTGQELARLPLDPRIGRMILAAREHQCLTEMLI
IASALSIQDPRDRPMQEKEAAENAHAKFADDKSEFLSFLKLWRWYGEQVQHKASQRKLVG
LLRQNFLSPLRLREWHDVHTQLASVVGEQGWRLNQTEATFEQIHMALLSGLLGNIGYKSD
EGGHYHGARDIRFHIHPSSRMVKKAGRWIIAAELVETTRLYARCVARIEPAWIERAAAHL
LRRNWSDPRWEKKAGQVVANERATLYGLVIYAGRRVHYGRINPQHARELFIREALVPGEI
DTRLPFVAQNRRLIAEIEKLEHRARRPDILVDEALIEAFYDRQIPAGMSQTATLEKWYAG
LDKAAADALLLTRDALMRHEAAGITTEVFPKKVEWQGVTMALDYHFEPGSPRDGVTLAVP
LFALNQIDPQRCEWLVPGMLKEKVQLLLKSLPQKIRRHCVPLPDYAAGFYDRWFDRLGDP
QQGLLDALADDMWQQVKVRPAPADFKLETLPPHLFMNFRVVDEHGRMLAAGRNLASLKAE
FGRQAQADFQQLAARDTQVAQALAQDGLTTWSFGPLPEIMEIKRKGQSVIGYPALVDRGT
HCDLDVFDDPDEARRHHKAGLLRLFRLGLREQIKFLEKNLPDLTRMSMLFMPLGSQESLR
DQIIDCALERACLAEPWPVDQEAFEARRLEGKGRLGLLAQEVARLTAAVLTEWAALQRKL
PQAKSHAAAYADLQQQIGALVPPSFLRDTPYAQLAHFPRYLKAAVARVDKLRADPARDQR
LMADMAPLLTQYQRARAALKGAADPRLDEFRWLLEELRVALFAQELRTPVPVSVKRLQKS
WESMRR
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcaagcctcaaaccccctctcggcgcggccggggcgcgcccggagcgggctcg
ccttccgtgcccgcatcgccagcatcgtccgcaacggcggcaaccgccgcatcgcgcgca
agcgccgcgtccgcggccaggcccgccgccacgccgcgcgtcatcccgcccatccgctat
cccgaagacctgcccgtcagcgcgcgccgcgacgagatcgcgcgcgccatccaggaccat
caggtggtgatcgtcagcggcgaaaccggctcgggcaagaccacgcagctgcccaagata
tgcctggacctcggccgtggccgcacgcgcatgatcggccatacccagccgcgccgcctg
gccgcgacctcggtggcgcgccgcatcgcggaagagctggacaccccgttgggtgaaatc
gtcggctaccaggtgcgcttcaacgatcgcaccggcccgaatgccgccgtcaagctgatg
accgacggtatcctgctggccgaaacgcagcgcgaccccctgctcaagcgctacgacacg
ctgatcatcgacgaagcgcacgaacgcagcctgaacatcgatttcctgctgggctacctg
aagcgcgtgctgccgcgccggccggacctgaaggtcatcatcacctcggccaccatcgac
gccgaacgcttcgcccggcacttcgccgccgagccggagcgtcccgcgccggtgatcgaa
gtctccggccgcctgtaccccgtcgaagtccgctaccgccccgtgcgcccggaagagacc
gaggaagcagccgcctcccgttcggcgcgcgaacgcgccggcgacgaagagcgcgacctg
gtcgacgccatcgtcgacgccgtggacgagtgcgcgcgccacggcccgggcgacgtcctg
gtgttcctgccaggcgaacgcgaaatccgcgaggcttccgaagcgctgcgcaagcgccat
cccgcggccaccgaggtgctggcgctgtacgcccgcctgtcgcaggccgagcaggaacag
atcttcaggccgcgcggcagcggccggcgcgtcgtcctggccaccaacgtcgcggaaacg
tcgctgaccgtgccaggcatccgcttcgtcgtcgacagcggcctggcgcgcgtcaaacgc
tactcctggcgcaacaaggtcgaacagctgcgcatcgagcccatcagccgcgcttccgcc
aaccagcgcgcaggccgctgcggccgcgtgggtcccggcgtctgcatacgcctgtatgac
gaggccgacttcaacgcgcgcgcgcccttcaccgatcccgaggtgctgcgttcctcgctg
gcgtccgtgatcctgcgcatgaagtcgctcaagctcgacgatatcgaggacttccccttc
gtcgaagcgccgccgggccgcgccatcgccgatggctatcatctgctgcaggagctgggc
gcgatcgagcccgtgcagcgcgccgaagcgcaggagaccgacgcgcgcgacgacgccacc
ggccccgccttcgctctgacccgcacgggccaggaattggcgcgcctgccgctggatccc
cgtatcggccgcatgatcctcgcggcgcgcgaacaccaatgcctgacggaaatgctgatc
atcgcgtcggccctgtcgatccaggacccgcgcgaccgccccatgcaggaaaaagaggcc
gccgaaaacgcccacgccaaattcgccgacgacaaatcggaatttctgtccttcctgaaa
ctgtggcgctggtacggcgaacaggtgcagcacaaggcgtcccagcgcaagctggtgggc
ctgctgcggcagaatttcctgtcacctctgcgcctacgcgaatggcacgacgtgcatacg
cagctggcatccgtggtgggcgagcagggctggcgcctgaaccagaccgaagccacattc
gaacagatccacatggcgctcctgagcggcctgctcggcaatatcggctacaagagcgac
gagggcggtcattaccacggcgcgcgcgatatccgtttccacatccaccccagctcgcgc
atggtcaagaaggcgggacgctggatcatcgccgccgagcttgtggaaaccacgcgcctg
tacgcgcgttgcgtcgcgcgcatcgaacccgcctggatagaacgggccgccgcgcacctg
ctgcgccgcaactggtccgacccgcgttgggaaaagaaagcggggcaggtcgtcgccaac
gagcgcgctaccctgtatggcctcgtcatctacgccggccgccgggtgcactatggccgc
atcaatcctcagcacgcgcgcgagctcttcatccgggaagccctggtgccgggcgagatc
gacacccgcttgcccttcgtcgcgcagaatcgccgcctgatcgcggagatcgaaaagctc
gagcatcgcgcccgccggcccgacatcctggtcgacgaggcgctgatagaggccttctac
gatcgccagatacccgccgggatgagccagaccgccaccctggaaaagtggtacgccggc
ctggacaaggcggccgccgacgcgctgctgctgacgcgcgacgcgctgatgcgccacgag
gccgcgggcatcaccaccgaggtcttccccaagaaggtggagtggcagggcgtcaccatg
gcgctcgactatcacttcgaacccggctcgccgcgcgacggcgtgacgctggccgtgccg
ctgttcgcgctgaaccagatcgacccgcagcgctgcgaatggctggtgcccggcatgctg
aaggaaaaggtccagctgctgctcaaatccctgccgcagaagatccgccgccactgcgtg
cccttgcccgactatgcggccggcttctacgatcgctggttcgatcgcctgggcgacccg
cagcagggcctgctcgatgcgctggcggacgacatgtggcagcaggtcaaggtgcgtccg
gcgcctgccgacttcaagctggaaaccttgccgccacacttgttcatgaacttccgcgtg
gtggacgagcacgggcgcatgctggccgccggccgcaacctggcgtcgctgaaggcggaa
ttcggacgccaggcgcaggccgatttccagcagctggccgcgcgcgatacgcaggtggcg
caagccctggcccaggatggcctcacgacctggtccttcggcccgctgccggaaatcatg
gaaatcaagcgcaagggccagtccgtgatcggctatcccgccttggtggaccgcggcacg
cattgcgacctggacgtcttcgacgatcctgacgaagcccgcaggcaccacaaggccggt
ctgctgcggctgttccggctggggctgcgcgagcagatcaagttcctggaaaagaacctg
ccggacctgacccgcatgagcatgctgttcatgccgctgggcagccaggaaagcctgcgc
gaccagatcatcgattgcgcgctggaacgggcctgcctggccgaaccctggccggtcgac
caggaagcgttcgaagcccgccgcctggaaggcaagggccgcctgggcctgttggcccag
gaagtggcgcggctgaccgccgccgtgctgacggaatgggcggccctgcagcgcaaattg
ccgcaggccaagagccacgcggccgcctatgccgatctgcagcagcagataggcgcgctg
gtgccgcccagcttcctgcgcgacacgccttacgcgcagctggcgcatttcccgcgctac
ctgaaggccgccgtcgcccgcgtcgacaagttgcgcgccgatccggcgcgcgaccagcgt
ctgatggccgacatggcgcccttgctgacgcaataccagcgcgcccgcgccgccttgaag
ggcgcggccgatccacggctggacgaattccgctggctgctggaagaactgcgcgtggcg
ctgttcgcgcaggaactgcgtacgcccgtgccggtgtcggtcaagcgcctgcagaagtca
tgggaatcgatgcgccgctga
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