Bordetella genomosp. 8: CAL12_20910
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Entry
CAL12_20910 CDS
T09515
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL12_20910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgv03019
]
CAL12_20910
03016 Transfer RNA biogenesis [BR:
bgv03016
]
CAL12_20910
Enzymes [BR:
bgv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CAL12_20910
Messenger RNA biogenesis [BR:
bgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CAL12_20910
Transfer RNA biogenesis [BR:
bgv03016
]
Prokaryotic type
tRNA degradation factors
CAL12_20910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
TMP-TENI
NuiA_2
KH_SLS1_2
KH_KhpA-B
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ARP83033
UniProt:
A0A1W6YR29
LinkDB
All DBs
Position
complement(4612077..4614242)
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AA seq
721 aa
AA seq
DB search
MFNKVTKTFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVAAKKAKPGQDFFPLT
VDYIEKAYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTLSV
NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKQSKLDLVVA
GTETAVLMVESEADQLSEEVMLGSVVFGHEQMQAVINAIHELVRDAGKPDWDWKPEPKNE
TLISAVTDAAKDGLVAAYQIREKQQRTTKLREVYADVQTQVAARAAETGAGQPDSVAVDN
ILFDLEARIVRGQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLKLL
PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPIKDHVAGVAMGLILEDGKF
AVLTDILGDEDHLGDMDFKVAGTQQGVTALQMDIKIQGITKEIMQVALAQAREGRLHILA
NMRDALSASRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDESQAKEAQRRIVELTADVEVGQVYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQNVRVKVIEADDKGRLRLSIKAIGGIEAQQAPQGEAAEGVPQSEPQ
Q
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtgacaaaaacgttccaatacggccagcacacggtcgtactggaaacc
ggagaaatcgcccgccaggcgtccggcgccgtcgtggtgtccatcgaggacaccgtggtg
ctggccactgtcgtcgcggccaagaaggccaagcccggccaggactttttcccgctgacc
gtcgactacatcgagaaagcctacgccgcgggccgtatcccgggcggcttcttcaagcgc
gaaggcaagccctcggaaaaggaaacgctgacgtcgcgcctgatcgatcgtccgctgcgt
ccgctgttccccgaaggcttctacaacgaagtccaggttgtcctgcacacgctgtcggtc
aatcctgaaatcgaccccgacatcgccgccatgatcggcgcgtcggccgcactggccatt
tcgggtatcccgttcaatggcccgatcggcgcggcccgcgtgggctacgtcgacggccag
tacgtgctgaaccccaccgcgtcgcagctcaagcaatccaagctggacctggtcgtggcc
ggtaccgaaaccgccgtgctgatggtcgaatccgaagccgaccagctgtcggaagaagtc
atgctgggttcggtggtgttcggccatgagcagatgcaggccgtgatcaacgccatccat
gaactggtgcgcgatgccggcaagccggattgggactggaagcccgagccgaagaatgaa
acgctgatctccgccgtcaccgacgccgccaaggatggcctggtcgcggcctaccagatc
cgcgaaaagcagcagcgcaccaccaagctgcgtgaagtctacgccgacgtgcagacccag
gtggccgcgcgtgccgccgaaaccggcgccggccagcccgactccgtcgcggtcgacaac
atcctgttcgacctggaagcgcgcatcgtccgcggccagatcctgaacggcgagccgcgt
atcgacgggcgcgacacccgcaccgtgcgtccgatcagcatccgcctgggcgtgctgccg
cgcgcccacggcagcgcgctgttcacccgcggtgaaacgcaggcgctggtcgtcgccacg
ctgggcaccaagcaggacgagcagatcatcgatgccctgatgggcgaatatcgcgaccgc
ttcatgctgcactacaacatgccgcccttcgccaccggcgaaaccggccgcatcggtgtg
cccaagcgccgcgaaatcggccacggccgcttggccaagcgcgccttgctgaagctgctg
cccgcgccggaagatttccagtacaccatccgcctggtctccgaaatcacggaatccaac
ggttcgtcgtcgatggcgtccgtatgcggcggttcgctggccatgatggacgccggcgtg
ccgatcaaggatcacgtggccggcgtggccatgggcctgatcctggaagacggcaagttc
gccgtgttgaccgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtg
gccggtacccagcagggcgtgaccgcgctgcagatggatatcaagatccagggcatcacc
aaggaaatcatgcaggtggcgctggcccaggcccgcgaaggccgcctgcacatcctggcc
aatatgcgtgacgccctgagcgcctcgcgtggcgagctgtcggccttcgcgccgcgcatg
ctgacgatcaagatcaaccccgagaagatccgagacgtcatcggcaagggcggcgccacc
atacgcgccctgaccgaggaaaccggcacgcagatcgacatctccgatgacggcaccatc
gtgatcgccagcgtcgacgaaagccaggccaaggaagcgcagcgccgcatcgtcgaactg
acggccgacgtcgaagtcggccaggtctacgaaggcagcgtgctgcgcctgctggatttc
ggcgccatcgtgcaggtgctgccgggccgcgacggcctgctgcacatctcggaaatcgcc
aactaccgcatcgccaacatcaacgatgtgctgaaggtcggccagaacgtccgcgtcaag
gtcatcgaggccgacgacaagggccgcctgcgcctgtccatcaaggcgatcggcggcatc
gaagcgcagcaagctccgcagggcgaggccgccgaaggcgtgccgcagtccgagccgcag
cagtaa
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