Bordetella genomosp. 8: CAL12_24705
Help
Entry
CAL12_24705 CDS
T09515
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv00260
Glycine, serine and threonine metabolism
bgv00460
Cyanoamino acid metabolism
bgv00630
Glyoxylate and dicarboxylate metabolism
bgv00670
One carbon pool by folate
bgv00680
Methane metabolism
bgv01100
Metabolic pathways
bgv01110
Biosynthesis of secondary metabolites
bgv01120
Microbial metabolism in diverse environments
bgv01200
Carbon metabolism
bgv01230
Biosynthesis of amino acids
bgv01240
Biosynthesis of cofactors
bgv04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
CAL12_24705 (glyA)
09102 Energy metabolism
00680 Methane metabolism
CAL12_24705 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CAL12_24705 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
CAL12_24705 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
CAL12_24705 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
CAL12_24705 (glyA)
Enzymes [BR:
bgv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
CAL12_24705 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
ARP83693
UniProt:
A0A1W6YSV5
LinkDB
All DBs
Position
complement(5467089..5468333)
Genome browser
AA seq
414 aa
AA seq
DB search
MFDRTRTISQVDEEVWAAIQKENTRQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYP
GKRYYGGCEYVDIVEQLAIDRLKELFGAEAANVQPNSGSQANQGVYMAVLKPGDKVLGMS
LAEGGHLTHGASVNASGKLYNFLPYGLDADEVLDYGKVESLAQEHKPKLIVAGASAYALH
IDFERMARIARDNGALFMVDIAHYAGLVAGGAYPNPVPHADFVTSTTHKSLRGPRGGVIM
MKAEYEKAINSAIFPGIQGGPLMHVIAAKAVAFKEALQPEFRDYAHQVARNAKVLAETLV
KRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIR
LGTPAITTRGFKEAETELTANLIADVLDDPRNEANIASVRERVNALTARLPVYG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaccgtacccgcaccatctcccaggttgatgaagaagtctgggccgccatccag
aaggaaaacacccgccaggagcagcacatcgagctgatcgcgtcggaaaactacgccagc
ccggccgtcatgcaggcccagggcacgcagctgaccaacaaatacgcggaagggtatccg
ggcaagcgctactacggcggttgcgagtacgtcgacatcgtggaacagctggccatcgac
cgcctgaaggaactgttcggtgccgaggcggccaacgtccagccgaattccggctcgcag
gccaaccagggcgtctacatggcggtgctcaagccgggcgacaaggtgctcggcatgagc
ctggccgaaggcggccacctgacgcacggcgcctcggtcaatgcctcgggcaagctgtac
aacttcctgccctacggcctggacgccgacgaagtgctggactacggcaaggtggaatcg
ctggcgcaggaacacaagcccaagctcatcgtcgccggcgcgtccgcctatgcgctgcat
atcgatttcgaacgcatggcccgcatcgcccgcgacaacggcgcgctgttcatggtcgat
atcgcgcactatgccgggctggtcgccggcggcgcctatcccaatccggtgccccacgcc
gatttcgtgacctcgaccacgcacaaatcgctgcgcggcccccgcggcggcgtcatcatg
atgaaggccgagtacgaaaaagccatcaattcggcgattttcccgggcatccagggcggt
ccgctgatgcacgtcattgccgccaaggcggtggccttcaaggaagcgctgcagcccgaa
ttccgcgactacgcccatcaggtcgcccggaatgccaaggtgctggccgaaaccctggtc
aagcgcggcctgcgcatcgtgtccggccgcaccgaaagccacgtcatgctggtcgacctg
cgcgccaagggcatcaccggcaaggaagccgaagcggtgctgggccaggcccatatcacg
gtcaacaagaacgccatcccgaacgacccggaaaagccgttcgtcaccagcggcatacgc
ctgggcacccccgccatcacgacccggggtttcaaggaagcggaaaccgagctgaccgcc
aacctgatcgccgacgtgctggacgatccgcgcaacgaagcgaacatcgcctcggtgcgc
gagcgcgtgaacgcgctcacggcccgcctgccggtctacggctga
DBGET
integrated database retrieval system