Bordetella genomosp. 8: CAL12_24895
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Entry
CAL12_24895 CDS
T09515
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bgv
Bordetella genomosp. 8
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bgv03016
]
CAL12_24895
Enzymes [BR:
bgv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAL12_24895
Transfer RNA biogenesis [BR:
bgv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CAL12_24895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ARP84728
UniProt:
A0A1W6YUS3
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All DBs
Position
5507257..5509176
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AA seq
639 aa
AA seq
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MHVFYEDDGQFKAGHILSEADASLQVESESGKRSKIKRANAIFTFSAPEPAELLRQAEAA
AEDIDLQFLWECAPQEEFDSPALAADYYGHAPSPTEQAALLLRLHSAPAYFHRRGKGRYR
PAPPDILAAALAALEKKQKQAAQQQQWVDDMVAGRLPEEIAAMAEALAVRPDKNTMQWKA
LESACSRLSKSPDRLLLDLGAFPNALALHKRRFLAQYFPRGTGFPEVQIPPSDRELPLAD
AEIYSVDDVTTTEIDDALSVSVLPDDTVRVGIHVAAPGLTVTRGSELDKLARARLSTVYM
PGDKIPMQPDAVIQAFSLDAGREVPALSLYVTANPATGEILASESRIERIVVKENLRHNL
LDEAVSEAALADPQSALPYAEWLRPLWRLAQALSAKRDEVRGKPENNSRVEYSYYVDGNP
DDPETPVRLVPRKRNAPLDRMVAEYMILANNLWGGLLAQHGVPGIYRSQQAGRVRMSTQP
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVDNGVSARLVAPFKPRDADLFAIIGAF
DAQYAAWGEFQNTMERYWCLRWLAQQGITRTTASVLRDDLVRLNNAPLVTRVGGLPSLAR
GAQVEIDLLDRDELTLEVECRFVGELAATAAEEGAAETE
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtgttttacgaagacgacggccagttcaaggccggacatatcctttccgaagcg
gacgccagcctgcaggtggaatccgaatcgggcaagcgcagcaagatcaagcgggccaac
gcgatattcaccttctccgcgccggagccggcggaattgctgcgccaggccgaagcggcg
gccgaggacatcgacctgcagttcctgtgggaatgcgccccccaggaggaattcgactcg
cccgcgctggcggcggactattacgggcacgcgccctcgcccacggaacaggcggcgctg
ctgctgcgcctgcacagcgcaccggcctacttccaccggcgcggcaagggccgctaccgc
cccgcgccgccggacatcctggcggccgcgctggccgccctggaaaagaagcagaagcag
gcggcccagcaacagcaatgggtggacgatatggtggccggacggctgccggaggaaatc
gccgccatggccgaggcgctggcggtgcggccggacaagaacaccatgcagtggaaggcg
ctggaaagcgcctgctcgcggctgtcgaagagccccgaccggctgctgctggacctgggc
gccttccccaacgcgctggcgctgcacaagcgccgcttcctggcgcagtattttccgcgc
ggcaccgggttcccggaggtacagatcccgccgtcggatcgcgagctgccgctggccgat
gcggaaatctattccgtcgacgacgtgacgaccaccgagatcgacgacgccctgtcggta
tcggtactcccggacgacacggtgcgcgtgggcatccacgtggcggcgccgggcctgacg
gtgacgcgcggcagcgagctggacaagctggcgcgcgcgcgcctgtccacggtctatatg
ccgggcgacaagataccgatgcagccggacgccgtcatccaggccttttcgctggacgcg
ggacgcgaggtgcccgccctgtcgctgtacgtgaccgcgaatcccgcgaccggtgaaatc
ctggcgtccgaaagccggatcgaacgcatcgtggtgaaggaaaacctgcgccacaacctg
ctggacgaagccgtcagcgaggccgcgctggccgacccccagtccgccctgccctacgcc
gaatggctgcggccgctgtggcggctggcgcaagccctgtccgccaaacgcgacgaggtg
cgcggcaagccggaaaacaatagccgtgtcgaatacagctattacgtcgacggcaaccct
gacgaccccgaaacgcccgtgcggctggtgccgcgcaagcgcaacgccccgctggaccgc
atggtggcggaatacatgatcctggcgaacaatctatggggcggcctgctcgcccagcac
ggcgtgccggggatctaccgttcgcagcaggccggacgggtgcgcatgagcacccagccg
ctgccgcacgaggccatcggcgtgccccagtacgcctggagcacgtcgccgctgcgccgc
tacgtggatctggtgaaccagtggcagctgatcgcggcggtggacaacggcgtatcggcg
cgcctggtggcgcccttcaagccgcgcgatgccgacctgttcgccatcattggcgccttc
gacgcgcaatacgcggcctggggcgagttccagaacaccatggaacggtattggtgcctg
cgctggttggcccagcaggggatcacgcggaccacggccagcgtactgcgcgacgacctg
gtgcggttgaacaacgcgcctttggtgacgcgggtgggcggcctgccgtccctggcgcgc
ggcgcgcaggtggaaatcgacctgctggaccgcgacgagctgacgctcgaagtggaatgc
cgcttcgtcggcgaactggccgcgacggccgccgaagaaggcgcggccgaaaccgaataa
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