Bordetella genomosp. 8: CAL12_27740
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Entry
CAL12_27740 CDS
T09515
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bgv
Bordetella genomosp. 8
Pathway
bgv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bgv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAL12_27740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgv03021
]
CAL12_27740
03400 DNA repair and recombination proteins [BR:
bgv03400
]
CAL12_27740
Enzymes [BR:
bgv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAL12_27740
Transcription machinery [BR:
bgv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAL12_27740
DNA repair and recombination proteins [BR:
bgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAL12_27740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ARP84237
UniProt:
A0A1W6YT38
LinkDB
All DBs
Position
complement(6113204..6117451)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATGSEAKIKKISKRLKVLEGFQKSGIKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGRGEGIFFTDVAEVQRAYDNG
EVELQSRITVRLTEFDKDEQGEWHPVVRRYETTVGRALLSEILPRGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMNDMLIPSAKETILGEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVTNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVIIEDDCGTSQGYSMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDTQETAIEAGTLLDEDLVDLIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGYMVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGEIVIHDDNGRERERHKIPYGATVLVGDGEAVKAGARLAS
WDPLTRPIVSEYAGQVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNESGEEVKIAGTDHSVNISFPVGALITVRDGQQVTVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTAFIPGEQVERSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHLARKDKEALEAAERE
AARQLANPFEEAPATIGSDSESDVAPEGGHEPAAE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgaccttttcaagcaagtctcgcaagacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccgttcgtggtcctacggcgaagtccgcaag
cccgaaaccatcaactaccgtacgttcaagcctgaacgcgatggcctgttctgctcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcat
cgcggcgtcatctgcgaaaagtgcggcgttgaagtcacggtcgccaaggtgcgccgcgaa
cgcatgggccatatcgaactggccagccccgtcgcgcacatctggttcctgaagagcctg
ccgtcgcgcctgggcatggtgctggacatgacgctgcgcgatatcgagcgcgtcctgtac
ttcgaagcctggtgcgtgatcgagccgggcatgaccccgctcaagcgcggccagatcatg
tcggacgacgacttcctggccaagaccgaagagtacggcgatgacttccgcgcgctgatg
ggcgcggaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgagctcaaggccaccggttcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaagtcgggcatcaagcccgaatggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaatgacctgtatcgccgggtcatcaaccggaacaaccgcctgaag
cgcctgctggaactgaaggccccggaaatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggtcgcttccgtcag
aacctgctgggcaagcgggtggactactccggccgctcggtcatcgtggtgggtccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggcgctggaactgttcaagcccttc
atcttcaaccgcctggaaatgatgggtctggccacgaccatcaaggcggcgaagaagctg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtcatccgcgaacacccg
gtgatgctgaaccgcgcgccgacgctgcaccgcctgggtatccaggccttcgaaccagtg
ctgatcgaaggcaaggccatccagctgcatccgctcgtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgtcgctggaagcgcagctggaagcg
cgcaccctgatgctggcctccaacaacgtgctgttcccggcgaacggcgagccgtccatc
gtgccgtcccaggatatcgtgctgggcctgtactacacgacgcgcgaacgcatcaacggc
cgcggcgaaggtatcttcttcaccgacgtggccgaagtgcagcgcgcctatgacaacggc
gaagtcgagctgcaaagccgcattaccgtgcgcctgacggaattcgacaaggacgagcag
ggcgaatggcaccccgtggtgcgtcgctacgagaccaccgtcggccgtgcgctgctgtcg
gagatcctgccgcgcggcctgcccttcacggtcctgaacaaggccctgaagaagaaggaa
atctcgcgcctgatcaaccagtccttccgtcgctgcggcctgcgcgatacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacgcgtggcggcatctcgatcgcc
atgaacgacatgctgatcccctccgccaaggaaaccatcctgggcgaggccagccgtgag
gtcaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaggaacgctacaac
aacgttgtggacatctggggcaaggctggcgacaaggtcggcaaggcgatgatggaacag
ctggccacggagcccgtgaccaaccgtcacggcgaagaagtgcgccaggaatcgttcaac
tccatctacatgatggccgactcgggcgcccgcggttcggccgcccagatccgccagctg
gcgggaatgcgcggcctgatggccaagccggacggctccatcatcgaaacgcccatcacg
gcgaacttccgtgaaggcctgaacgtgctgcagtacttcatctcgacgcacggtgcgcgt
aagggcttggccgatacggcgctgaagaccgcgaactcgggttacctgacccgccgcctg
gtcgacgtgacgcaggacctggtcatcatcgaagacgactgcggcacctcgcagggctac
tcaatgaaggccctggtggaaggcggcgaagtcatcgaaccgctgcgcgatcgcatcctg
ggccgcgtggctgcgatcgatatcgtcaaccccgatacgcaggaaactgcgatcgaggcg
ggcacgctgctggacgaagacctggtcgacctgatcgaccgcatcggcgtggacgaagtc
aaggtccgcacgccgctgacgtgcgaaacgcgtcacggcctgtgcgcgcattgctatggc
cgcgacctgggccgtggttatatggtcaacgtcggcgaagccgtcggtgtcatcgccgcg
cagtccatcggcgaaccgggcacgcagctcacgatgcgtaccttccacatcggtggcgcg
gcgtcccgttcggcgctggccagcgcggtggaaaccaagtccaacggtacggtgggcttc
gccagcacgatgcgctacgtcaccaacgccaagggcgaacgcgtggctatctcgcgctcg
ggcgaaatcgtcatccatgacgataacggccgcgaacgcgaacgccacaagatcccgtac
ggcgcgacggtgctggtcggcgacggcgaagccgtcaaggccggtgctcgcctcgcaagc
tgggatccgctgacccgtccgatcgtgtcggagtacgccggccaggtgcgcttcgaaaac
atcgaggaaggcgttaccgtcgccaagcaggtggacgaagtcaccggcctgtcgacgctg
gtcgtcatcacgcccaagacgcgcggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagtctggcgaagaggtcaagatcgccggtaccgaccactcggtgaacatctcg
ttcccggtgggcgcgctgatcacggtgcgcgatggccagcaggtcaccgttggtgaagtg
ctcgcacgtattccgcaggaatcgcagaagacgcgcgacattaccggcggtctgccgcgc
gtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctggccgacgtcacg
ggtacggtttcgttcggcaaggacaccaagggcaagcagcgtctggtcatcacggacctg
gaaggcgtcagccacgagttcctgattccgaaggaaaagcaggtgctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtggacggtccggcggatccgcacgatatcctg
cgcctgcagggtatcgagaagctggccacctacatcgtggacgaagtgcaggacgtgtac
cgtctgcaaggcgtgaagatcaacgacaagcatatcgaggtgatcgttcgccagatgctg
cgtcgcgtgaacatcgtcgatgcgggcgatacggcgttcatccctggcgaacaggtcgag
cgttccgagttgttgaacgagaacgatcgcgtggtcgccgaggacaagcgtccggccagc
tacgacaacgtcctgctgggtatcacgaaggcctcgctgtcgacggattccttcatttcg
gctgcctcgttccaggagaccacgcgtgtcctgaccgaagccgccatcatgggcaagcgc
gacgacctgcgcggcctgaaggaaaacgtcatcgtgggtcgcctgatccccgccggtacc
ggcctggcgtaccaccttgcccgcaaggacaaggaagcgctggaagcggccgaacgcgaa
gcagctcgccagctggcgaatccgttcgaggaagcgcccgcgaccatcggctcggacagc
gaaagcgatgtcgcgccggaaggtggccacgagccggccgccgaataa
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integrated database retrieval system
