Candidate division Kazan bacterium GW2011_GWA1_50_15: VE98_C0001G0007
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Entry
VE98_C0001G0007 CDS
T03988
Name
(GenBank) RNA polymerase sigma-70 subunit RpoD, RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bgw
Candidate division Kazan bacterium GW2011_GWA1_50_15
Brite
KEGG Orthology (KO) [BR:
bgw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VE98_C0001G0007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgw03021
]
VE98_C0001G0007
Transcription machinery [BR:
bgw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VE98_C0001G0007
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AKM84466
UniProt:
A0A0G4B9B5
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Position
4922..6475
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AA seq
517 aa
AA seq
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MARIRSSKSAAKRRTAKRAVRRPAKKRAVAKKAAQKIARHRPAKKAAVKRSAAKRRLSRK
AKTTKRKLTAKKVVRGKKSRKPAVKKRSISRAKATAKKPIGRKLKRAGAPIATEPVTEEE
INDKLIDLDAEEIAAAAESKRVRAVGKLPPSLQMFIQRGKEQGFVTQQELERTMPDVEKD
VGALDLLFKALLEEGVEVVDVRDDLIWSSGVSEKVSKKTEATKKKMRSKLDIGISANLAD
DGISDDSVRMYLKEIGQVPLLTAAEEVMLAKRVEKNDILASKQLAEANLRLVVSIAKKYI
GRGLSLLDLIQEGNIGLMKAVEKFDWHKGFKFSTYATWWIRQAITRAIADQARTIRIPVH
MVETMNRLARTQRQLVQELGREPTPEEIANEMELEVEKVNHILKISQETVSLEKSVGDED
DSLLGDFIKDEDSLTPEEASAYELLKKDVGEVLHLLTPREQKILKMRFGLDGEWAHTLEE
VGQEFGVTRERIRQIEAKALMKLRKSKDSKRLKDYLK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgaatccggtcatcgaaatcagcggccaagcgccgtacggcgaagcgagcggta
cggcggccggccaagaaaagagcggtagctaaaaaggcggcccaaaaaatagcccggcac
agaccagcgaagaaagctgcggtcaagcggtcggccgccaagaggcgacttagccgcaaa
gccaagacaactaaacgtaaattgactgctaaaaaagttgttcgcgggaaaaagtctcgc
aaaccggcagttaaaaaacgatctatttcgcgggccaaagcgactgccaaaaaaccgatt
ggtcgcaaactaaaacgagctggggctccgattgcaactgagccagttaccgaagaagag
atcaacgataagctgatcgaccttgatgccgaggagatcgccgcagctgctgaatccaag
cgagtacgagcggtcggcaaacttccgccatctctgcagatgttcattcaacgaggcaag
gaacaagggtttgtgacccaacaggaattggaacgaacgatgccagatgtcgagaaggat
gtcggggcgctagacctactgtttaaggcgctgctggaagaaggggtggaggtcgttgac
gtgcgagatgacttgatctggtcctcgggggtgtcagagaaggtgagcaagaaaaccgag
gcgactaaaaagaagatgcggagcaagctcgatatcggcatcagcgccaacttggctgat
gacggcatcagcgacgactcagtaagaatgtacttgaaagaaataggccaagtaccgctt
ttgactgccgcggaagaagtgatgttggccaaacgggtggagaagaacgatattctcgct
tccaagcagttggctgaagccaacttgcggttagttgtatccatcgccaaaaaatatatt
ggtcgaggcttgtcgttactggatctcattcaagaaggcaatatcggtctaatgaaagca
gtcgaaaaatttgattggcacaagggctttaaattctcaacttatgcgacttggtggatt
aggcaggccattactcgggcaatcgccgaccaagctcggactattcgtatcccagtgcat
atggttgagacgatgaaccggctggcgcggacccagcgtcaattagtgcaggagttgggt
cgtgaacccacgccggaagagatcgctaatgaaatggagttggaggtggaaaaagttaat
catattctgaaaatctcgcaggaaaccgtcagtttggagaaatctgtcggtgatgaggac
gactctttgttgggcgactttatcaaagacgaagacagtctgacgccagaagaggcctcg
gcctatgaactattaaaaaaggatgtgggcgaggtattgcacctgctgaccccccgcgag
caaaaaatcctcaagatgcggttcggtctggatggggagtgggcgcacactttggaagag
gtcggacaggagttcggggttactcgtgaacgcatccggcagatcgaggccaaagcgctg
atgaaacttagaaagtcgaaagattcaaagagattaaaagattatctgaaatag
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