Bifidobacterium pullorum subsp. gallinarum: ESN35_02950
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Entry
ESN35_02950 CDS
T06507
Name
(GenBank) DUF3418 domain-containing protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bgx
Bifidobacterium pullorum subsp. gallinarum
Brite
KEGG Orthology (KO) [BR:
bgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgx03019
]
ESN35_02950
Enzymes [BR:
bgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ESN35_02950
Messenger RNA biogenesis [BR:
bgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ESN35_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
SLFN-g3_helicase
T2SSE
HA2_C
AAA_30
nSTAND3
NACHT
nSTAND_NTPase5
Zeta_toxin
AAA_11
ResIII
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
QAY32500
UniProt:
A0A4P6DUY2
LinkDB
All DBs
Position
CACC514:complement(773818..777954)
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AA seq
1378 aa
AA seq
DB search
MRFEYPKELPVSAAKDQIAQAVRTSQVVIVSGQTGSGKTTQLPKILLELGRGSHGHQIVH
TQPRRLAARTVAERIASEMGVRLGDEIGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPQ
LSRYDTIIIDEAHERSLNIDFLLGYLTALLPRRRDLKLIITSATIDSVKFQEHFEHALHA
PVPVIEVSGRTYPVQIVYEPLGTAPALMRSVPGFETGAMPGEQAYAELSAAPTASEREGR
GRERETPIDMPTAVARACAELVIHSSHAAGPRDILVFASGERDIHEFEAALRHHYGPRAA
DMRRPDAIEIVPLFARLSAKEQHRVFEAHTHQRIIIATNVAETSLTVPGIRYVVDPGTAR
ISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFTEPEILR
TSLGAVVLHMLSVGVARTAEDVTTFGFIDPPDMKAVSDGFNELVELKAIARRQGGVMLTH
IGRQLARIPIDVRLGRMVIEAARSTTPNTLAAVLVVAAFLSLQDPRERPEENRDKADRIH
NRYADPSSDFLTALNIWDRVFQADGNPSNSALRRICKTEYFSWLRMRQWKDLVTQLTEMC
REFKFKVGEPIPISRPDLKIRQLPINQQAAHTLCCSWDAQGIHTSMLAGLLSMMGMQVLR
EPKASDFAGLKGAAKARAMKRAQKMAKNDYQGARGTRFALFPASSVAKSTPPWVMSTELV
ETSRLWARYSAAIDPAWAEPLAGNLTRTTYAEPHWSGSRGSAVASAKVLLYGLPIVQDRT
VQWGRINPPEARDFLIRQGLVEGDIQQRFQHDAFVQRNLEVLEEAAEDASRTRQLAGTVS
DEDLFDFYNARIPNDVTSVADLGKWWKSVYDDDPHLLDFDPEKVERLADTESVSLSDYPD
QWHTLGTDGTPIDLKLSYVYDPQAQDDGVTVHIPLKALSRLTPEQFSWNVPGLLDELIVG
LIKALPKALRVQFVPAPDTARRIRAWIDEHYPDLPGSGDRQRPNTPPQDAPVEVVPGTGG
AAWPDFAHVFTQAAIHTVGAQIHPEVLGPDLMARLTPYLRMTFAVEQQLPPAKNQRGRRH
ARGPVKTLGTGKDLNALQRRFAQEAESSARQMVQRKARAAGDQGKLVEQANLLQKAGATT
ESRAAMLWRGALDALRLPSERVSSRWLGAEALMLASAPYRSTKDLVEDLQLAAVKRLLPH
IDDLADDAALAEAVADIAQVFEDTVYAVAHDVIAVLKRYAEIDKAVSGPADLPMLSVLQS
IREHIATLVHPGFIGATPPASLPRLATYLQADLLRLNKAKADKNRDVRWAWEADEARQLV
DAAVSRAKAEPAGPRHESLTKQADAAHWMLEEFYVSLWAQELGTSGPVSLQRIRKALQ
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcgagtatccgaaggagttgccggtcagcgcggccaaggaccagatcgcgcag
gccgtgcgcacctcgcaagtcgtcatcgtctccggccagaccggttccggcaagaccacg
cagctgccgaagatcctgctcgaactcggccgcggctcgcacggccatcagatcgtgcac
acgcagccccgccgcttggccgcacgcaccgtcgccgaacgcatcgcctctgagatgggg
gtcaggctcggcgacgagatcggctatcaggtgcggttcaccgacgaaagctccccgaag
acccgactgcgcgtggtcaccgacggcatcctgctcgcgcagatccagcgcgacccgcag
ctgagccggtacgacaccatcatcatcgacgaggcacatgagcgcagcctcaacatcgac
ttcctgctcggctacctgacggcgctgctcccccgccgccgggatctgaagctcatcatc
acctccgccaccatcgactcggtcaagttccaggagcatttcgaacacgcgttgcacgcg
ccggtgccggtgatcgaggtgtccggacgcacctacccggtgcagatcgtctacgagccg
ctgggcaccgcgcccgcgctgatgcggtccgtgcccgggttcgaaaccggcgcgatgccc
ggcgaacaggcgtatgcggagctgtcggccgcaccgaccgcctccgaacgggagggccgg
ggccgcgagcgcgagaccccgatcgacatgcccaccgccgtggcccgcgcctgcgccgag
ctggtcatccattccagccatgcggccggtccccgcgacatcctggtcttcgcctccggc
gagcgcgacatccacgagttcgaggccgccctgaggcaccattacgggccgcgcgccgcc
gatatgcgccgcccggatgccatcgagatcgtgccgttgttcgcgcggctgtccgccaag
gaacagcatcgggtgttcgaggcgcacacgcatcagcgcatcattatcgccacgaatgtg
gccgagacctcgctgacggtgccgggcatccggtatgtggtggatccgggcacggcccgc
atctcccggtattcgaaaaccgccaaggtgcagcgtctgccgatcgagccgatcagccag
gccagcgccgaccagcgttccggccgatgcggccgtgtggccgacggcatcgccatccgc
ctgtacagccgcgaggactacgagacgcggccgcggttcaccgagccggagatcctgcgc
acctcgctgggcgcggtggtattgcacatgctcagcgtgggcgtggcccgcaccgccgag
gacgtgaccacgttcgggttcatcgacccgccggatatgaaggccgtctccgacggcttc
aacgagctggtggagctcaaggccatcgcccgccgtcagggcggcgtgatgctgacgcat
atcggccgccagctggcccgcatcccgatcgatgtgcgtctagggcgcatggtgatcgag
gcggcgcgctcgaccacgccgaacacactggccgccgtgctggtggtggcggcgttcctg
agcctgcaggatccgcgcgagcgcccggaggagaaccgcgacaaggccgaccgcatccac
aaccgctacgccgacccgtccagcgacttcctgaccgcgttgaacatctgggaccgcgtg
ttccaggccgacggcaaccccagcaactcggcgttgcgccgcatctgcaaaaccgagtat
ttcagctggctgcgcatgcgccagtggaaggatctggtcacgcagctgaccgagatgtgc
cgcgagttcaagttcaaggttggcgagccgatcccgatctcccgcccggatctgaagatc
cgccagctgccgatcaaccagcaggcggcgcacacgttgtgctgctcctgggatgcgcag
ggcatccacacctccatgctggccggcctgctctcgatgatgggcatgcaggtgctgcgc
gagccgaaggcctcggatttcgccggcctcaagggtgcggcgaaggcgcgggcgatgaag
cgcgcgcagaagatggcgaagaacgactatcagggcgcgcgcggcacgcggttcgcgcta
ttcccggcctccagcgtggccaagtccacgccgccgtgggtcatgagcaccgagctggtg
gagaccagccgcctgtgggcgcggtattcggccgccatcgacccggcgtgggcggagccg
ctggcgggcaacctgacccgcaccacctacgccgagccacactggtccggctcgcgtggt
tcggccgtggcgagcgcgaaggtgctgctgtacggtctgccgatcgtgcaggaccgcacc
gtgcagtgggggcggatcaacccgcccgaggcgcgcgacttcctgatccgccagggactg
gtggagggcgacatccagcagcggttccagcatgacgcattcgtccagcgcaacctggag
gtgttggaggaggccgcggaggatgcgagccgcacgcgtcagctggccggcacggtgagc
gacgaggacctgttcgacttctacaacgcgcggattcccaacgacgtgacctcggtggcc
gatctgggcaagtggtggaagagcgtgtatgacgacgatccgcacctgctggatttcgat
ccggagaaggtggagcgcctggccgacacggagtcggtgagtctgtccgattacccggac
cagtggcacacgctcggcaccgatggcacgccgatcgacctgaagctgagctatgtgtat
gatccgcaggcgcaggatgacggcgtgaccgtgcacatcccgttgaaggcgctctcccgc
ctgacgccggagcagttcagctggaatgtgccgggcctgttggatgagctgatcgtgggg
ctgatcaaggcgctgcccaaggcgctgcgcgtgcagttcgtgccggcgccggacacggcc
cgccgcatccgtgcatggatcgacgagcattatccggatctgcccggctccggcgaccgg
caacggccgaatacgccgccgcaggacgcgccggtggaggtggtccccggcacgggtggc
gccgcctggccggatttcgcgcatgtgttcacgcaggccgccatccacacggtcggcgcg
cagattcaccccgaggtgctgggaccggatctcatggccaggctcacgccgtatctgcgg
atgacgtttgccgtggagcagcagctgccgccggcgaagaaccaacgcggtcgccggcat
gcccgcgggccggtcaagacgttgggcaccggcaaggatctcaacgccctgcaacgccgg
ttcgcgcaggaggccgagtcctccgcccggcagatggtgcagcgcaaggctcgggccgcc
ggcgatcagggcaagctggtcgagcaggcgaacctgctgcagaaggccggggcgaccacc
gagtcccgggccgccatgctgtggcgcggcgcgttggacgcgctgcggctgccttccgag
cgcgtctcctcgcgctggctgggggccgaggcgctgatgctggcctccgcgccgtatcgg
tccaccaaggaccttgtcgaggatctgcagctggccgccgtcaaacggctgctgccgcac
atcgatgatctcgccgacgacgccgcgctggccgaagccgtggcggacatcgcccaggtg
ttcgaggataccgtatacgcggttgcgcatgatgtgatcgccgtgctcaagcgctacgcc
gagatcgacaaggctgtctccggtcccgccgacctgccgatgctctcggtgctgcagtcc
atccgcgaacacatcgccacgctcgtgcaccccgggttcatcggcgccacgcccccggcc
tcgctgccgcgcctggccacgtacctgcaggccgacctgctgcgcctgaacaaggccaag
gccgacaagaaccgtgatgtgcgctgggcttgggaggccgacgaggcccgacagctcgtg
gacgccgccgtgtccagggccaaggccgaaccggccggcccgcggcatgagtcgctgacc
aagcaggcggacgccgcccattggatgctggaggagttctacgtctcgctctgggcgcag
gagctcggcacctccggccccgtgagcctgcaacgcatccgcaaggcgcttcagtaa
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