Bacillus glycinifermentans: BGLY_0566
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Entry
BGLY_0566 CDS
T04537
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bgy
Bacillus glycinifermentans
Pathway
bgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGLY_0566 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgy03019
]
BGLY_0566 (cshA)
03009 Ribosome biogenesis [BR:
bgy03009
]
BGLY_0566 (cshA)
Enzymes [BR:
bgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGLY_0566 (cshA)
Messenger RNA biogenesis [BR:
bgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGLY_0566 (cshA)
Ribosome biogenesis [BR:
bgy03009
]
Prokaryotic type
rRNA helicases
BGLY_0566 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
SCA84389
UniProt:
A0AAJ3YXZ9
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All DBs
Position
1:598493..599953
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AA seq
486 aa
AA seq
DB search
MTITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLIDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPEDHQTL
LFSATMPAPIKRIAERFMNNPEHIKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTT
KRKMDRMKPPTLDEAIEGQQQVTVDRIRTIMEENNLNFYMSAAAELLEDRDAVTVVAAAI
KMMTKEPDDTPVRLTEEAPLRTKRHKSHHRSSKRRDGGGYRGKNNRSSYDKKRSSNDRRQ
KKSYNS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttcaattaagttcagatctcacaaaagcgattaaacgc
atgggatttgaagaagcaacaccgattcaggcgcaaacgataccgcttggacttgcaaat
aaagatgtcatcggacaagcacaaacgggaacaggaaaaacggctgcatttggcattcct
cttgttgagaaaatcaaccccgagtctcctaacattcaagccattgttatcgcacctact
cgtgaattagccattcaagtttctgaagagctatataaaatcggacaggataaacgcgct
cgagttcttccgatttacggaggccaggatatcggccgccaaattcgcgcgctcaagaaa
aatccccacattatcgtcggaactccaggccgtctgatcgaccatatcaaccgccgcacg
atgcgtctgcaaacggtcaataccgttgtgcttgatgaagcggacgaaatgctgaacatg
ggattcatcgaagatatcgaatcgattctttccaatgtaccggaagatcaccagacattg
ctgttttctgcaacgatgccggcgccgattaagcggatcgccgaacgctttatgaacaat
ccggagcatattaaagtaaaagcgaaggaaatgacggtttcaaacattcagcaattctat
ctggaagtgcatgaacgcaaaaaatttgatacgctgacacgtcttctcgacatccagtct
cctgagcttgcgatcgtcttcggccgtacgaagcgccgcgttgatgagttgacggaagcg
ctgaacctgcgcggctatacggctgaaggaattcacggagatttgacacaggcgaagcgg
atggtagccctccgcaaattcaagcaaggcgcaatcgaagtgcttgtcgcaacagacgtt
gctgcccgcggtctggatatttccggagttacgcacgtttataactttgatgttccccaa
gatcctgaaagctacgttcaccgtatcggaagaacgggccgcgcgggcaaaacgggaatg
gcgatgacattcattacaccgcgtgagaaggatatgctgcgtgccatcgaacaaacgaca
aaacgcaaaatggaccggatgaaaccgccgactcttgacgaggctatcgaaggacagcag
caggtaaccgttgaccgcatccggacgatcatggaagaaaacaacctgaacttctatatg
tctgcagcggctgaactgctggaagaccgtgatgcagtaacggtcgtagcggctgccatc
aaaatgatgacaaaagagccggatgatacgcctgtccgtttgacagaagaagcgcccctc
agaacgaagcggcataaaagccaccaccgttcatcaaagcggagagacggtggcggatac
agaggaaagaacaaccgttcttcctatgataaaaagcgttcttcaaatgacagacgccaa
aaaaaatcctataattcataa
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