Halalkalibacterium halodurans: BH0069
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Entry
BH0069 CDS
T00039
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BH0069 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bha03400
]
BH0069 (mfd)
Enzymes [BR:
bha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BH0069 (mfd)
DNA repair and recombination proteins [BR:
bha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BH0069 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
Efg1
DUF5636
Motif
Other DBs
NCBI-ProteinID:
BAB03788
UniProt:
Q9KGJ2
LinkDB
All DBs
Position
85041..88586
Genome browser
AA seq
1181 aa
AA seq
DB search
MLGLQRFIQEQEDTQAIVQGLEVNMKEQLVSGLSGSARPAVMAALYKETRRPQLVITYNL
YQAQKIFEDLVELVGADHVLLYPVNDLISSEIAIASPEMKAQRIDVLNQLVAGFSGIVVV
PLAGMRRLLPPSSLWKESQIRLSVGDDIGDLESLIRRLVRNGFTRVDMVTTPGECSVRGG
IIDLYPLTEEDPIRIELFDTEIDSIRTFTIEDQRSKDSLSEVVIGPAAEIIMDEEHFIQG
ASRLEDRLSQTLKKVKKKEVKEKLTEQISFDISELKQKHPFPSMYKYISLFYDDTYSLFS
YVPSNGVIFVDEMSRVKEMSESLEKEEAEWHTTLIEQGEIVHDVTLAHSVLEQMKQGVLP
IVYLSLFVRHVPSTNPQNIISFQCKSMQNFHGQMPLLQSEVKRWISSQFATVFIAATRER
AKRLNHVLAEEGIEALVVDGEAPLTPGQAQIMVGALTSGFELTLHKLVVITEEEIFAKKV
KRPQRKQKLSNAERIKNYSELKVGDLVVHTNHGIGKYLGIETLEINGVHKDYLHIRYAGN
DKLYVPVEQIDQVQKYVGAEDKDPKLYSLGKSDWKKVKRRVQSSVEDIADDLIKLYAERE
ASKGFAFAPDGPEQAEFEASFPYQETEDQLRAIQEIKEDMEKERPMDRLLCGDVGYGKTE
VAIRAAFKAIMNGKQVAILVPTTILAQQHFETIQERFADYPINIGVLSRFRSRKEQSQTL
KGLKAGSVDLVVGTHRLLSKDVQFKDLGLLIVDEEQRFGVTHKEKIKQLKANIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNSPLVREAIERELSRGGQVYFLY
NRVENIERMANEISMLVPDARVSFAHGQMKESELESIMLAFLEGESDVLVTTTIIETGVD
IPNVNTLIIHGADKMGLSQLYQIRGRVGRSNRVAYAYFTYQRDKVLSEVAEKRLQAIKEF
TELGSGFKIAMRDLAIRGAGNLLGAQQHGFIESVGFDLYSQMLKEAIEKRKGEQPKEEPR
NVEIDVQVDAYIPDSYIQDAKQKIEMYKRFRGVETIEEINDLKDEMFDRFGEYPQEVSDL
LQLTTIKIIAYQEGVESIVESKGQWIILLSPETTEGIDGAKLFEVIHKLDQQVGLGTEGE
RIKLTLKTKQLGTNQLLEVTETLLASLADVKKQPSPVNSVS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgctaggtttacaacgttttattcaagaacaggaagacacacaagcgattgtacagggc
ttggaagtgaatatgaaggaacaactagtctcaggattgtcagggtctgctaggcctgcc
gttatggctgctttatataaggagacaagacggccacagcttgtcattacctataatttg
tatcaagcacagaaaatctttgaggatcttgtcgaactcgtaggggcggatcatgtacta
ctctatcccgttaacgatttgatttcatcagaaattgcgattgctagcccagaaatgaaa
gcgcaacgcattgacgtattaaatcagctcgtagctggattttcaggaatcgtagtcgtt
ccattagcaggcatgcggcgtctattgcctccttcttccttatggaaggaaagccaaatt
cgtttaagtgttggggatgacatcggtgacttggagtcgttgattagacggcttgttcgc
aatggttttactcgtgttgatatggtgacgaccccgggagaatgtagtgtccgtgggggc
attattgatctgtatcccttaacagaggaggacccaattcgaattgaattgtttgacacg
gaaatcgattcgattcggacatttacgattgaagaccagcgttcaaaggactcgctatcc
gaagttgtcattggaccagcggcggaaatcattatggatgaagagcattttattcaaggg
gcatcacgcttagaggaccgtctcagtcaaacgttaaaaaaagtaaagaaaaaagaagta
aaagaaaaactaaccgaacaaatttcttttgatattagtgagctgaagcagaaacatccg
tttccatcgatgtacaaatacatttctcttttttacgatgatacgtacagccttttttca
tacgtaccttccaatggggtcatttttgttgacgaaatgagtagggttaaagaaatgtcc
gaaagtttagagaaagaagaggcggaatggcatacgacgcttattgaacaaggggaaatt
gtccacgatgtaaccttagctcactcagttctagagcagatgaagcaaggcgtcttaccg
atcgtttacttgtcgcttttcgtgcgtcacgtgccgtctacgaatccgcaaaatattatt
agcttccaatgcaaatcgatgcaaaactttcatggacaaatgccactgcttcaatcggaa
gttaagcgctggatttcatcgcaatttgcgaccgttttcattgcggcgacgagggagcgg
gcgaagcgactaaaccatgtcttagctgaggaaggaatagaagccctcgttgtagatggg
gaagctccacttacgccaggtcaggcgcaaattatggtcggtgcattaacgagcggcttt
gaattgacgctgcacaagctagtggtgattacagaagaagaaatatttgcgaaaaaggtg
aagcggccacagcggaaacaaaaactatcgaacgccgaaagaattaaaaactatagcgag
ttaaaagtaggcgatttagtcgtccatacgaaccacgggatcgggaaatatttaggaatc
gaaaccttagaaattaatggggttcacaaggattatttacacattcgctatgcaggtaac
gataaactatacgttcctgtagaacaaatcgatcaagtgcaaaaatatgtgggcgccgaa
gataaagatccaaagctgtactctctaggaaaaagcgattggaaaaaggtaaagcgccgt
gtccagtcatcagtggaagacattgctgatgatttaatcaagctgtatgctgagcgagaa
gcgagcaaagggtttgcattcgctccagatggaccagagcaagcggagtttgaagcatca
tttccatatcaagaaacagaagatcagcttcgagcgattcaagagataaaagaagacatg
gaaaaagagcgtccgatggatcggcttctttgtggtgacgttggctatgggaaaacagag
gtggcgattcgcgctgctttcaaggccattatgaacggaaagcaagtggcgattctcgtg
ccaacgaccatcttagcgcagcaacattttgaaacgatccaggagcgcttcgctgattat
ccaattaacattggggttcttagtcgttttcgttctcgaaaggaacagtcacaaacgctt
aaaggactaaaagcaggatcggttgaccttgtggtcggtacccatcgtctgctgtccaag
gatgttcagttcaaagatctcggcttgctcattgtcgatgaggagcagcgctttggggtg
acgcacaaggagaaaattaaacagttaaaggcaaatattgacgttctaacattaacggca
acgccgattccgcgaacacttcacatgtcgatgctcggcgtccgtgatctttctgtcatc
gaaacaccaccagagaaccgcttcccggtgcaaacctatgtggtagaatataacagccct
cttgtgcgagaagcgattgagcgtgaactatcccgtggtggacaagtgtattttctttac
aatcgtgtggaaaacatcgagcgaatggcaaatgaaatctctatgctcgtcccagatgcc
cgagtgtcttttgcccacgggcaaatgaaagaaagcgaattagagtcgattatgctcgcc
ttcttagaaggggagagcgatgtgttagtaacgacgaccattattgaaacaggtgtggac
attccaaatgttaacacgctcatcatccacggtgccgataaaatgggcttgtcccaactg
tatcaaatccgcggacgggtcggacgctccaatcgggtggcttacgcctatttcacgtat
cagcgtgacaaagtgttgtccgaagttgcagaaaagcgactccaagccattaaggaattc
acggagctcgggtctggatttaaaatagcgatgcgagatttagcgatccgtggtgcgggt
aatttgcttggcgcgcagcagcatggttttattgaatcggttggctttgatctatactca
caaatgttgaaggaagccattgaaaaacgaaaaggcgaacagccaaaagaagaaccacgt
aacgtggaaattgatgtacaagtggatgcttatataccggattcgtacattcaagacgca
aagcaaaaaattgaaatgtacaaacggttccgtggagtcgagacgatcgaagagatcaac
gacttaaaggacgaaatgtttgatcggttcggtgaatatcctcaagaagtaagtgacctt
ctacagctaacgacgataaaaattatagcctatcaagaaggcgtcgaaagcattgtggag
tcaaagggtcaatggattattctcctttcgccagaaacgacagaagggattgatggcgct
aagctgtttgaagtcattcataagctcgatcagcaagttggtcttgggactgaaggtgag
cgaataaaattaacgttaaaaacaaagcagctagggacaaatcaattgctggaagtaaca
gaaacgctcttggcttcactggcggatgtaaaaaaacaaccgtctccagttaattcggtt
tcctaa
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