Halalkalibacterium halodurans: BH0127
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Entry
BH0127 CDS
T00039
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BH0127 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bha03021
]
BH0127 (rpoC)
03400 DNA repair and recombination proteins [BR:
bha03400
]
BH0127 (rpoC)
Enzymes [BR:
bha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BH0127 (rpoC)
Transcription machinery [BR:
bha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BH0127 (rpoC)
DNA repair and recombination proteins [BR:
bha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BH0127 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAB03846
UniProt:
Q9Z9M1
LinkDB
All DBs
Position
159295..162915
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFEYMKIGLASPNKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGDTPLEKKQLLSEKEFRAYLDKYGRSFTAQMGAEAIRKLLM
DIDLDKEVDGLKEELQTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVQPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAKGEGSVFKDTNEALIAYQNGYVHLHTRIAIP
VASLGKTTFKEEQNSQLLLTTVGKLIFNEILPESFPYVNEPTAHNLEVETPSKYMVPTST
NVKELFQERDVVAPFKKGFLGNIIAEVFKKFKITETSKMLDRMKDLGFKYSTKAGITVGV
ADIVVLPEKKEILAEAEKKVDRVLKQFRRGLITEEERYDRVISIWSEAKDVIQDKLMGSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEVEAIKEGNEIIEGLY
DRLVGRVAFKTVRHPETGEPIVKKNELIHEDLAKQIVEAGVEQVTIRSVFTCDTRHGVCK
KCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVITEIEGEVTNINEADKREITVKGEMETKTYSIPYGARIKVELGEQVVPGQ
SLTEGSIDPKELLKVQGMTGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVID
AGDTEVLPGSLIEIQHFNDENKKVLLSGKRPATGRPVLLGITKASLETDSFLSAASFQET
TRVLTDAAIKGKRDELVGLKENVIIGKLVPAGTGMNRYRNLDIVSDYDQQAVGTEEAVME
EAVTTE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgtaaacaattttgagtacatgaaaattggtcttgcttcaccaaataaaatt
cgttcttggtctcgcggcgaagtgaaaaagccggaaaccattaactaccgtaccctcaaa
ccagaaaaagacgggcttttctgcgagcgtattttcggtccgcaaaaggactgggagtgt
cactgtggaaaatataagcgcgttcgctacaaaggggtcgtttgtgaccgttgtggtgtt
gaagtcacgcgggcgaaggttcgccgtgagcggatgggtcatattgagctagcagcacct
gtctctcatatttggtactttaaaggaatcccaagccgaatggggcttgttttggatatg
tctccacgatcacttgaagaagtcatctactttgcttcttatgtagtgacagatccaggg
gatacaccacttgaaaagaaacaattactttctgaaaaagaatttcgcgcgtacttagat
aaatatggccgctcatttacagcgcaaatgggggcggaagcgattcgtaagctgcttatg
gatatcgacctcgataaagaagtcgatgggctaaaagaagagcttcaaacagcgcaaggc
caacgccggacacgtgcaattaaacgacttgaggtgcttgaagcatttcgtaactctgga
aatgaaccttcttggatgatccttgatgttcttccggtcattccaccagaattacgtcca
atggttcagcttgatggggggcgctttgcaacctctgacctcaacgacttatatcgtcgc
gtgattaaccgaaacaaccggttaaagcgtctcttagatctaggcgcaccaagcatcatt
gtgcaaaacgagaagcgtatgctgcaagaagcggttgacgctctcatcgataacggtcgc
cgtggccgcccagtgacaggtcctggtaaccgcccacttaaatctctttctcatatgttg
aaagggaagcaagggcgcttccgtcaaaaccttctcgggaagcgtgtagactactcgggt
cgttccgttatcgtcgtaggtccgaacttaaaaatgtatcagtgcggcctgccaaaggaa
atggcgcttgagctgttcaagccatttgtcatgaaagagcttgtaagcaaagggttagca
cataacattaaaagcgcgaaacgaaaagtggaacgggtacaaccagaggtatgggacgtt
cttgaagaagttatcaaagagcatccggttcttcttaaccgtgcaccgacccttcaccgt
ttaggaatccaagcgtttgagccgacactcgtggaaggtcgtgcgatcaagctgcatccg
cttgtatgtacagcgtataatgccgactttgacggggaccaaatggcggttcacgtcccg
ctatcagcagaagctcaagctgaggcgcggattttaatgttggctgcgcaaaacatctta
aacccgaaagatggaaagccggttgttacgccgtcacaggatatggttcttgggaactac
tatttgacgatggagcgtgaaggtgcaaaaggcgaaggttctgtatttaaagatacgaac
gaagctttaatcgcgtaccaaaacggctatgttcatttgcatacacggattgcgattcct
gttgcttctttagggaaaacgacatttaaagaagagcaaaactctcagttgttgttaaca
acggttggaaagcttatttttaatgagattctacctgaatcgttcccttatgtgaatgag
ccaactgctcataacttagaggtggaaacaccgagcaagtatatggttccgacttcaacc
aatgtgaaggaacttttccaagagcgtgatgtagtcgctccatttaagaaaggattcctt
ggaaacatcattgctgaagtgtttaagaagtttaagattaccgaaacgtctaaaatgctt
gaccgtatgaaagacctcgggtttaaatactcaacgaaagctggtattacggtcggtgtt
gccgatatcgtagtcctgccagagaagaaggaaattcttgctgaagctgagaaaaaggtt
gatcgtgtgcttaagcaattccgccgtggtttaattacggaagaagagcgttatgaccgt
gtcatctccatctggagtgaagcgaaggatgtcattcaagataagttgatgggctcctta
gataaacgcaacccgatctttatgatgagtgactctggtgcccgtggtaacgcctctaac
tttacacagttagcaggtatgcgtgggttaatggcgaacccgtccggtcgaattatcgaa
cttccaattaaatcaagcttccgtgaagggttaaccgtcctcgagtactttatttcgact
cacggtgcccgtaaaggtcttgccgatacagcccttaagacagctgactctggttactta
acacgacgtcttgttgacgttgcccaggatgtcatcgttcgcgaggatgattgtggtacg
gatcgtggcttagaagtggaagccattaaggaagggaacgaaatcattgaaggtctttac
gaccgacttgttggccgcgtagcctttaagacggttcgtcaccctgaaaccggtgagccg
attgtaaagaaaaacgagctaattcacgaagatctcgcaaagcaaattgttgaagctgga
gttgaacaagtaacgattcgctctgtcttcacatgcgatacacgtcacggtgtatgtaaa
aaatgctacggccgcaaccttgcaacaggtagcgatgtagaagttggcgaagcggtaggt
atcatcgcagctcaatcgatcggtgaaccaggaacgcagttaacgatgcgtacgttccac
accggtggggttgcgggagacgatattactcaaggtcttccgcggattcaggagctattc
gaagctcgtaatccaaaagggcaagcggttatcaccgagattgaaggggaagttaccaac
attaatgaggcagataagcgcgaaattacggttaaaggtgaaatggagacgaaaacttac
tccattccttacggcgctcgtattaaagtagagcttggcgagcaagtcgttccgggacag
agcttaactgaagggtctattgatccgaaagagttgctgaaagttcaagggatgacaggt
gtccaagaatacttgcttcgtgaagtacaaaaagtataccgtatgcaaggggtagaaatt
ggcgacaagcacgtagaagtgatggtgcgtcaaatgctacgtaagattcgcgttattgat
gcgggagacacagaagtgttgccaggctctctaattgagatccaacactttaatgatgag
aacaaaaaagttctcctttcagggaaacgccctgcaactggtcgcccagtcttacttgga
attacgaaagcatcccttgaaacagactcgttcctatcagcggcatcgttccaggaaacg
acgcgtgttcttaccgatgcagccattaaagggaaaagagatgagcttgttggcctaaaa
gaaaatgtcatcatcgggaagctcgtgccagcaggtacaggtatgaaccgttaccgtaac
ttagacattgtgtccgattatgaccaacaagccgttggtaccgaagaagcagtgatggaa
gaagcggtaacgacagaataa
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integrated database retrieval system
