Halalkalibacterium halodurans: BH2418
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Entry
BH2418 CDS
T00039
Symbol
polC
Name
(GenBank) DNA polymerase III (alpha subunit)
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03030
DNA replication
bha03430
Mismatch repair
bha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BH2418 (polC)
03430 Mismatch repair
BH2418 (polC)
03440 Homologous recombination
BH2418 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bha03032
]
BH2418 (polC)
03400 DNA repair and recombination proteins [BR:
bha03400
]
BH2418 (polC)
Enzymes [BR:
bha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BH2418 (polC)
DNA replication proteins [BR:
bha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BH2418 (polC)
DNA repair and recombination proteins [BR:
bha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BH2418 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
Rv2179c-like
HHH_3
RNase_H_2
DNA_pol_A_exo1
DEDDh_C
Auto_anti-p27
DUF1409
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
BAB06137
UniProt:
Q9KA72
LinkDB
All DBs
Position
complement(2538791..2543092)
Genome browser
AA seq
1433 aa
AA seq
DB search
MNEEQRVRQERFKLLMEQLLIPEDVTANHLKDGKIEKLTIKKDERRWHFQLSIPTVLPAS
IYELLADRLVQTFSHIAKVSFQIQYGQPDLSEQVWQSYWPLIVAKLTNISQPLKEMLEKQ
TPRFDGKRLVIQVGNETEAIALKRKLTEPLQQAVQSFGFPAVQLDAEVKESKQAFEKFVE
QRKQEDHSKVVEAILEKKKLEQQVEKKMKEEKLTIGYPIKDEPVPLETIVEEERRITVQG
YIFAAETKELRSGRTLLTFKITDYTDSILVKMFSRDKEDIPLLQAVKKGMWVKVRGGVQN
DTFVRDLVMIANDVNEVSGKETKDEAPDDEKRVELHLHTAMSQMDGISSAGAYVTQASKW
GHKAIAITDHGVVQAFPEAYGASQKHGIKVIYGVEANLVDDGVPIAYNEAHIPLLDSEFV
VFDVETTGLSAVYNKIIELAAVKVKNGEIIDRFERFADPHEPLTNTIIELTGITDDMLKG
QPEVEQVLNEFHAFIGDAVLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYP
TLKNHRLNTLCKKFDIELVSHHRAIYDAEATGHLLWRMVKDATERDILYHDQLNDNMGEG
NFHRQRPSHCILLAQTQEGLKNLYKLVSMAHVEYFYRTPRIPRSQLQKHREGILVGSGCD
KGEVFEGMMQKTPQEVEEIAKFYDYIEVQPLANYEHLIEKELVKSREALQEIVANIVKLG
EQLGKPVVATGNAHYLKEEDYIYRKILIASQGGANPLNKQTLPQVHFRTTSEMLEAFAFL
GEEKAKEIVVTNTNHIADQIEEIHPIPDKLYTPKIEGADEEIRQMSYNRARKIYGDPLPE
IVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVN
PLPPHYVCPNCHHSHFFNDGSVGSGYDLPDENCPKCGTPYVKDGQDIPFETFLGFKGDKV
PDIDLNFSGEYQPRAHNYTKELFGESYVYRAGTIGTVAEKTAYGYVKGYQSDHDLHFRGA
EIDRLVTGCTGVKRTTGQHPGGIIVVPDYMDIHDFCPIQFPADDRGAEWKTTHFDFHSIH
DNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPDVLGVTEEQILCKTG
TLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHGTDVWLNNANELIYNGTCELKDVIG
CRDDIMVYLIYKGLEPSLAFKIMEFVRKGKGLQPEWIEEMKKHDVPDWYIGSCLKIKYMF
PKAHAAAYVLMAVRIAYFKVHYPILYYASYFTVRADDFDLDTMVKGSAAIRAKIEEINGK
GLDASPKEKSLLTVLELALEMVERGFSFQKVDLYRSEATEFLVEGNTLIPPFNALTGVGT
NAAINIVKARDEREFLSKEDLQQRSKITKTVLENLDAHGCLEGLPESNQLSLF
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagaacaacgcgtgcgccaggagcgcttcaaattgttaatggagcagctactc
atcccggaagacgtaacagctaaccatttgaaggatggaaaaatcgaaaagctcacgatc
aaaaaagatgagcgccgatggcactttcagttgtctataccgacggtgttacccgcttcc
atctatgagctacttgccgatcgcttggttcagacgttctctcacattgccaaggtgagc
tttcagatccaatatggacaaccggatctctcagaacaagtgtggcaatcctattggcca
ttgatcgttgctaaactaacgaatatctcgcaaccacttaaagaaatgcttgagaagcaa
acaccgcgctttgacggcaaaagacttgtcattcaagtcggaaatgaaacagaagcaatc
gcgttaaagcggaagctgacggaaccgttgcagcaagcggtgcaatcgtttggcttcccg
gctgtgcaattagatgcggaagtcaaggaatcgaagcaggcgtttgaaaaatttgtcgaa
cagcgaaagcaagaagatcattcgaaagtggttgaagcgatactagaaaagaaaaagctt
gaacagcaagtggaaaagaagatgaaggaagagaagctgacgattggttatccgatcaag
gatgaacccgttcccctcgagacgatcgtggaggaagaacgccgtattaccgttcaaggt
tacatatttgcagccgagacaaaggagcttcgcagcgggcggacgttattaacctttaag
attacagattacaccgattcgatcttggtgaaaatgttctctcgtgataaagaagacatt
ccgttattacaagctgtgaaaaaaggaatgtgggtaaaagttcgtggcggggttcaaaac
gatacgttcgttcgcgatcttgtgatgattgcgaacgacgtcaatgaagtaagtggaaaa
gagacgaaagatgaagcaccagacgatgaaaagcgggttgagctccatttgcatacggca
atgagtcaaatggatggtatttcgtctgcgggtgcgtatgtaacgcaagcgagcaaatgg
ggccacaaggcgattgcgattactgaccatggcgttgttcaggcgtttcctgaggcgtac
ggtgctagtcagaagcacgggatcaaagtcatttatggggttgaagcaaacttggtcgat
gacggtgtaccgattgcctataatgaagcccacataccgcttctcgatagcgaatttgtc
gttttcgacgtggagacgactggtctttctgccgtttacaacaaaattattgagcttgcg
gcagttaaagtgaaaaacggcgaaatcattgatcggttcgagcgatttgccgaccctcat
gaaccgctcaccaatacgattattgagctaacaggaatcacggatgatatgctgaaaggc
caaccggaagtggagcaagtgctcaatgaatttcatgcgtttatcggcgatgccgtcctc
gtcgcccacaacgccagctttgatatggggttcctcaatacaggatttcaaaaaatgggg
ctcggtgaagcaaaaaatccggtcatagacacattagagttaggacgctttctttacccg
acactgaaaaaccaccgcctaaatacgctttgcaaaaagtttgacatcgagctcgtaagc
catcaccgagcgatttatgatgcggaagcaacaggacatttgctttggagaatggttaaa
gacgcgacggagcgagacattttgtatcatgaccaattaaacgacaacatgggggaagga
aatttccaccgccaacggccgtcccattgcattttgcttgcacaaacgcaagaagggtta
aagaacttatataagctcgtgtccatggcccatgtcgaatacttttatcgtacaccgcgc
atccctcgttctcagttgcaaaagcatcgggaagggattctcgttggctctggttgcgac
aaaggtgaagtgttcgagggtatgatgcaaaaaactccgcaagaagtagaagaaatcgcc
aaattctatgattatatcgaagtccagccgctagcaaactatgaacatttgatcgaaaaa
gagcttgtgaaaagccgcgaagcgttgcaggaaatcgtagcgaatatcgtcaagcttgga
gagcagcttggcaagccagttgttgcgacaggaaatgcccactaccttaaggaagaagat
tacatttatcgaaaaatattaattgcttcacagggcggggccaatcctttaaataagcaa
accctcccgcaagttcattttcgaacaacatctgaaatgctagaggcgttcgccttttta
ggggaagagaaggcgaaagagatcgtagtcacgaacacgaatcacattgcagatcagatc
gaagagattcatccgattccagataaattgtacactccgaaaattgaaggggccgatgag
gaaattcggcaaatgagctacaatagagccaggaagatttacggtgatcctctacctgaa
attgtggaagcccggctagaaaaagagcttaagagcatcatcggacacgggtttgcggtt
atttacttaatctcgcataaacttgtaaagaaatcactcgatgacggctacctagtcggt
tctcgtggctcggtcggttcatcgtttgtggcgacgatgactgagattactgaagtgaac
ccgttgccgcctcattacgtatgccctaactgtcatcattctcatttctttaatgatggg
tcggtcggttcaggctacgacttgccagatgaaaattgtccaaaatgcggtacgccttat
gtaaaagacggacaagacattccgttcgaaacgttcctcggctttaaaggggacaaggtt
cctgatatagatttgaacttctcgggggagtatcagcctagagcccataactatacgaaa
gagctgttcggtgaatcgtacgtctaccgtgcaggaactatcggtacggttgcggaaaaa
acagcttacggatatgttaaaggctaccaaagtgatcacgacctccacttccgcggggca
gagatcgaccgacttgtgacgggctgtacgggggtaaaaaggacgaccggtcagcatccg
ggcggaattattgttgttccagattatatggatattcacgacttttgcccgattcaattc
ccggcagatgaccgcggagccgaatggaaaacgactcatttcgacttccattccatccat
gacaacttgctaaagctcgatattctaggacacgatgatccgacggtcatccgaatgctc
caagatttgagtgggattgatccaaaaacaatcccgacggatgacccagaagtgatgaaa
atcttcagtggtccagacgtgttaggtgttactgaggaacaaattctgtgtaagacagga
acgcttgggattcctgagtttggaacaaggttcgtgcggcagatgttagaggaaacaaag
ccgagtacgttttcagaactcgtacaaatttcaggcctatctcacggaacagacgtatgg
cttaacaatgcgaacgagctcatttataacggaacgtgtgagttaaaagatgtgatcggc
tgccgggacgatattatggtttacttgatctataaaggacttgaaccatcacttgccttt
aaaattatggagtttgtccgtaaagggaaaggccttcagccagaatggattgaagaaatg
aaaaagcatgatgtgcctgattggtacatcggctcctgcttaaaaatcaaatacatgttc
ccgaaagctcacgccgctgcttacgttttaatggcggttcggatcgcttactttaaagtc
cattatccgatcctttattacgcctcttattttacggttcgagcagacgattttgacctc
gatacgatggtaaaaggctcggcagccattcgggcgaaaatcgaggagattaacggtaaa
ggactcgatgcatctccgaaagagaaaagcttgctgaccgtccttgaacttgcgttagaa
atggtcgagcgtggcttctccttccaaaaagttgacctatatcgctcagaagcgactgag
tttcttgtggagggcaatacgcttatcccaccgttcaacgcgctgacaggtgttggaaca
aatgctgcgattaacatcgttaaagcaagagatgagcgggagttcctttcgaaggaagat
ttgcagcaacgaagcaaaataacaaagacagtattagaaaatctcgatgctcacgggtgc
ctggaaggattacctgaatcgaatcaactatcgctgttttag
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integrated database retrieval system
