Halalkalibacterium halodurans: BH3781
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Entry
BH3781 CDS
T00039
Symbol
rho
Name
(GenBank) transcriptional terminator
KO
K03628
transcription termination factor Rho
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BH3781 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bha03021
]
BH3781 (rho)
03019 Messenger RNA biogenesis [BR:
bha03019
]
BH3781 (rho)
Transcription machinery [BR:
bha03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BH3781 (rho)
Messenger RNA biogenesis [BR:
bha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BH3781 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
Mor
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAB07500
UniProt:
Q9K6E8
LinkDB
All DBs
Position
complement(3899715..3900986)
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AA seq
423 aa
AA seq
DB search
MGVHLSELENMKLRELYELARKYKISYYSKLTKKELIFAILKGQAEEDGLMFMEGVLEII
QSEGFGFLRPINYMPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYHGLLHVEAV
NGEDPDTSKERPHFPALTPLYPERKLNLETTPGRISSRIIDMISPVGFGQRGLIVAPPKA
GKTSLLKEIANSIVHNHPDVELIVLLIDERPEEVTDIERSVDADVVSSTFDEVPENHIKV
AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMELHLDRKLSERRIFPAIDIRR
SSTRKEELLMPKEHLEKLWAVRKTMNDSPEFVDHFIRRVKETKTNDEFFEAMEKDMTNGT
RKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcatttatctgaactggaaaatatgaaattgcgagaactctatgaactcgca
cggaaatataaaatttcctactatagtaaactgacaaaaaaagaacttatttttgcgatt
ttaaaaggacaagcagaggaagacggacttatgttcatggaaggggtcctcgaaattatc
cagtcggaagggtttggtttcttaagaccaattaattacatgccaagctctgaagacatt
tacatttctgcctcacaaattcgccgttttgatttgcgaaatggagacaaggtatcaggt
aaagtaaggccacctaaagaaaatgagcgttatcatggccttttgcatgtggaagcggtt
aacggagaagatcccgatacgtccaaagagcggccgcactttccagctcttacgccatta
taccctgagagaaagcttaatttagaaacaacgcctggacgaatttcttcgcggattatc
gatatgatctcacccgttggatttggtcagcgtggcttaattgtagcgccgccaaaggca
gggaagacatccttgttgaaagagattgctaacagcattgtccacaaccacccggatgta
gaactaatcgtcctcctcattgatgagcgtccggaagaagttacagacattgagcgctcc
gtagatgccgacgtggtcagctcgacattcgatgaggtaccagagaatcatattaaagtg
gccgagctcgtgttagagcgagcgatgcgtcttgtagagcacaaaaaagatgtcatcatc
ctaatggatagcattacccgactcgcccgtgcctacaacttagtcattccaccgagtgga
cgaacgttgtctggaggaattgatccagcggcattccaccgtccgaagcgatttttcgga
gcggcgcggaacattgaagaaggcggaagcttaacgattttggcgaccgcgcttgtggaa
acagggtcacggatggatgacgtcatttatgaagaatttaaaggtacagggaatatggag
cttcacttagatcggaagctatcggagcgtcggattttccctgcaatcgatattcgccgt
tcaagcacgcggaaagaggaactcctcatgccaaaagaacatttagaaaagctttgggcg
gtgagaaagacaatgaacgattcaccggaatttgtcgatcattttattcgccgtgtgaaa
gaaacaaaaacgaacgacgaatttttcgaagcgatggaaaaagatatgacgaatggcact
cgaaaaaagtag
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