Bacillus haikouensis: KJK41_08375
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Entry
KJK41_08375 CDS
T08945
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bhai
Bacillus haikouensis
Pathway
bhai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJK41_08375 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhai03019
]
KJK41_08375 (rnjA)
Messenger RNA biogenesis [BR:
bhai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KJK41_08375 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
QWC24314
LinkDB
All DBs
Position
complement(1707386..1709053)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNADKIKGLFVTHGHEDHIGGIPYLLRELNIPIYGGKLALGLIKNKLEEHGLLRNAKLN
VIQEDDVIKFRKTSVTFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLAK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERKVGESINDIFRKVDGRVIFATFASNIHRLQQ
VVEAAVYHNRKVAVFGRSMEAAITIGQELGYIRAPKDTFIEHNQINRLPANEVAILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTISVNRTINMLFRAGAEVIHGPL
SDIHTSGHGGQEEMKLMLRLMNPTFFMPIHGEFRMQKMHAQLGVDCGVREENCFIMDNGE
VLALSNDSAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKEFKI
ASGPDLISRGFVYMRESGDLINEAQNLIAKHLNKVLERRTSQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtgaagaatgaccaaaccgcagtatttgcccttggcggtttaggtgaaatc
ggtaaaaacacatatggcgtacagtttcaagatgaaatcattttaatcgacgcagggatc
aagttccctgaagatgagctgctcggtattgattatgtaattcctgattacacatacctt
gtaaagaacgcggataagatcaaaggactcttcgtcactcatggccacgaagaccatatc
ggagggatcccatatcttctgagggaattgaatatcccgatctacggcggcaaacttgct
cttggccttattaagaataaacttgaagaacacggtttattaagaaatgccaagcttaat
gtcatccaggaagatgatgtgatcaagttccgtaaaacatccgtcactttcttcagaaca
actcacagtatcccggattcttatggaatcgtcgtaaagacaccacctgggaatgtcgtt
cacactggagactttaaattcgacttcacacctgtcggcgagcccgcgaacctcgctaaa
atggctgaaatcggaaaagaaggcgtgctttgcctgttgtccgacagtacgaatgctgaa
gttccaaacttcacaatgtcggaacgcaaagtcggagaaagcatcaatgatatcttccgt
aaggttgacggacgtgtcatctttgctacattcgcttcaaacattcaccgccttcaacag
gtggttgaagcagctgtttaccataaccgtaaagtagccgtatttggccgcagtatggaa
gcagccatcaccatcggacaggaattaggatatatcagagcacctaaagatacattcata
gaacacaatcagatcaatcgtctgcctgccaatgaagtagcgatactttgcacaggttct
caaggtgagccgatggctgccttatcaaggattgcgaatggtactcaccgccagatacaa
attcagcctggcgataccgtcgtattctcatcttccccgatcccagggaacacgatcagt
gtaaaccgcacgatcaatatgctgttccgtgccggagccgaggtcattcatggacctcta
agtgacattcatacatcaggtcacggcggacaggaagaaatgaaattgatgctgcgcctc
atgaatccaacattcttcatgccgatccacggtgagttcagaatgcagaaaatgcatgcc
cagctcggtgtcgattgcggagtgcgtgaagaaaactgcttcatcatggataatggagaa
gtgcttgcattaagcaatgactctgcacaagtggcaggtaagatcccttctgggaatgtc
tacattgatggaagcggaatcggggacatcggtaacatcgtattgcgcgaccgccgcatc
ctttctgaggaaggcctagtcatcgtagtcgtaagcatcgatatgaaagaattcaaaatt
gcgtcaggcccggacctgatttccagaggattcgtttatatgcgtgaatccggcgatctc
atcaacgaagcacagaatctgattgccaagcatttaaacaaagtactggaaagaagaaca
tcacaatggtctgaaatcaagaatgaaatcactgataccctggctccattcttatatgaa
aaaacaaaacgccgtccaatgatcctgccgatcatcatggaagtataa
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