Bacillus haikouensis: KJK41_18810
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Entry
KJK41_18810 CDS
T08945
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bhai
Bacillus haikouensis
Pathway
bhai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJK41_18810 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhai03019
]
KJK41_18810 (rnr)
03016 Transfer RNA biogenesis [BR:
bhai03016
]
KJK41_18810 (rnr)
Enzymes [BR:
bhai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KJK41_18810 (rnr)
Messenger RNA biogenesis [BR:
bhai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KJK41_18810 (rnr)
Transfer RNA biogenesis [BR:
bhai03016
]
Prokaryotic type
tRNA degradation factors
KJK41_18810 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
CSD
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QWC22288
LinkDB
All DBs
Position
complement(3768120..3770447)
Genome browser
AA seq
775 aa
AA seq
DB search
MDENIKEHVDKLLSYMRDEAYKPLTVQELEEAFGIEGSTNFKDFVKALVVMEEKGLVVRT
RSNRYGLPEKMNLVRGKVSAHAKGFAFVIPEESGMDDIFIPPNETNNAMHGDIVLVRVSS
NSSGSRREGTIVRIVERGVDQMVGTFTQSKHFGFVIPDDKKFASDVFIPKSAQKGAIEGH
KVVVKLTAYPEGRKSAEGEVVEILGHKNDPGVDILSIIHKHGITVEFPEEVMEQANNVPD
TIDESEIPNRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTYYVKESS
PIDQEAFDRGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCDMEISPDGEVVKHEI
FQSVIKTTERMTYSDVNKILVDKDEELRKHYEPLVPMFEQMEDLAQILRTKRMKRGAIDF
DFKEAKVLVDDEGEPTDVVLRERSVAEKLIEEFMLVANETVAEHFHWMEVPFIYRIHEDP
KEDKLQRFFEFITNFGLIVKGTANSVHPRALQEIIEDVQGKSEEMVVSTMMLRSMQQAKY
DPESLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKIDQATRDKWGAQMGNIAQ
HTSSRERRAVDAERETDELKKAEYMEDKVGEEYDGIISSVTNFGMFVELPNTIEGLVHVS
YMTDDYYRFDERHLAMIGERTGNVFRIGDEITIRVVSVNKDERAIDFEIVGMKNNRRERP
AESRTFRSDSGKGKSSSRKKDDGEWSTRPPKNNKKKKKNKKHYENAPRSKRKKKK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaatattaaagagcatgtggataaactcctttcctacatgagagatgaggcc
tataagccgctgacggtacaggagctggaggaagcattcggaatcgagggctccaccaat
ttcaaagattttgtaaaggcgcttgtcgtgatggaagagaagggtcttgtggtgcgtacc
cgcagcaaccggtatggtctgccggaaaaaatgaatctggtaagaggaaaggtttccgcc
catgcgaaaggattcgctttcgtcatacctgaggaatcgggcatggatgatatcttcatc
cctccgaatgaaacaaacaacgcgatgcacggggacatcgtccttgtacgtgtgtcatcg
aactcgtcgggttcaagacgggaagggaccatcgtccggatcgtggaacgcggtgtcgat
cagatggtcggtacgttcactcaaagcaaacactttggattcgtcatccctgatgataag
aagtttgcaagcgacgtctttatccctaagtccgcccaaaagggagctatcgagggacat
aaggttgtcgtgaagctaacggcttatcctgaaggccggaagagtgcagaaggggaagta
gttgaaatcctcggtcataaaaatgatcccggcgtcgatatcctgtcgatcattcataaa
cacggcatcacggtcgagtttcctgaagaagtgatggaacaggcaaataatgtacccgat
acgatcgacgaatccgagattccgaatagaagggacctgcgtgaccagaccatcgttacg
attgacggagcggatgcaaaggaccttgatgatgcggtaacggtgacaaagctcgataac
ggcaactacaagctcggagtacatatcgccgatgtcacctattatgtaaaagaaagctct
ccgatcgatcaggaagcattcgaccgcggaacgagtgtatacctcgtagaccgggtcatc
ccgatgatcccgcaccgactctcaaacggtatctgttcattgaatcctcaggtggaccgt
ttgacactttcctgtgacatggaaatctcaccggacggggaagtagtcaaacacgaaatc
ttccagagtgtcatcaagacaacggaaagaatgacgtactctgatgtaaataaaattctt
gtcgacaaagacgaagagctccgtaaacattatgagccgctggtgccgatgttcgagcaa
atggaagaccttgcccagatcctgcgtacaaaacggatgaaacgcggcgccatcgacttt
gatttcaaagaagcaaaagtccttgtcgatgatgaaggggaaccgacggatgtcgtcctg
cgtgaacgttccgttgcagaaaaactgatagaagaattcatgctcgttgccaacgaaacg
gtggcggaacatttccactggatggaagtaccgttcatttaccgtatccacgaagatccg
aaagaagacaagctgcagcgcttcttcgagttcatcacgaacttcggattgattgtaaaa
ggcacagccaactccgtacacccgcgcgcccttcaggaaatcattgaagacgtacagggt
aaatcggaggaaatggttgtctctacgatgatgctccgttcgatgcagcaggcgaaatat
gatcctgaaagcctcggtcactttggactggcgacagagttctacactcatttcacatcg
ccgatccgccgttaccctgacctgatcgtccaccgtctgatcagaacgtacctgattgaa
gggaaaatcgatcaagcgacgcgcgataaatggggagcgcagatgggcaatatcgcgcag
catacatcaagccgcgagcgccgtgctgtcgacgcagagcgtgaaacggatgaactgaaa
aaagcagagtacatggaagacaaagtaggggaagagtacgacgggatcatctcttccgtc
acgaacttcggtatgttcgtcgaactgcctaacacgattgaaggtcttgtccatgtcagc
tacatgacagacgattactaccgtttcgacgagcggcacctcgccatgatcggcgagcgg
acaggcaacgtcttccgcatcggtgatgaaatcacgatacgcgtcgtcagcgtcaacaaa
gacgaacgcgccatcgacttcgaaatcgtcggcatgaaaaacaaccgcagggaacggccg
gccgaatcccgcaccttccgctcagacagcggaaaaggaaaatcctcgtcacgcaaaaaa
gacgacggagaatggtcaacccgcccgcccaaaaacaacaaaaagaaaaagaaaaacaaa
aaacactacgaaaacgccccaagaagcaaacgtaaaaagaaaaagtag
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