Bacillus haimaensis: ABN702_00580
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Entry
ABN702_00580 CDS
T10988
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bham Bacillus haimaensis
Pathway
bham02020
Two-component system
bham02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bham00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABN702_00580 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABN702_00580 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bham03021
]
ABN702_00580 (rpoN)
Transcription machinery [BR:
bham03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABN702_00580 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
HTH_11
MarR
Sigma70_r4_2
HTH_17
Fe_dep_repress
HTH_Tnp_4
HTH_IclR
HTH_38
LacI
HTH_Crp_2
HTH_AraC
MarR_2
Phage_terminase
HTH_Tnp_ISL3
HTH_20
HTH_32
HTH_36
Xre-like-HTH
HTH_21
HTH_24
Motif
Other DBs
NCBI-ProteinID:
XPD20731
LinkDB
All DBs
Position
125452..126783
Genome browser
AA seq
443 aa
AA seq
DB search
MKQSVSLYQEQTLKLAMTQELKQAITLLQYSSHELLDFLQEQSLENPLLELKELEAPREF
AASRVQRLRQRSKPGAKQGFSIENFSRHGETLHHHIEHQLLDSCLPANQLQIIKRMIDYI
DANGYLQEETETIAQQLRVPTLQVEQAIINIQSLEPAGIGARDLKECLLLQLRRLPKRSH
LAERILEEDFTLFAEKAWKTLAKKHEISLKEIQEVHDEIVKLHPRPGNLYETTEKPRYII
PDLIVQQLHQQFVVSLNEEIVPQIAINEKYKSSFSSQTEVDAYLQEKLQQCQWIVKSIEH
RKHTLVKVMEEIVSAQLSFFLNGHSFLKPLTLKDIAERLNVHESTVSRATKEKYVQTPFG
LFELKYFFSQSLTGRFDEEKSTKQVQQLVEELVKAEDKQKPLSDQQLTNLLQKQYHIAIS
RRTVAKYRDLLNIPSSSMRKRYD
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatctgtaagtttgtatcaggaacaaacactgaagcttgcgatgacgcaggag
ttgaagcaggccattacgttgctgcagtattcttcgcatgagctgcttgattttctgcaa
gagcaatctctggaaaacccccttttagagctgaaggaattggaggctccaagggagttt
gcggcttctcgcgttcagcgcctgagacagcgcagcaaaccaggggcaaaacagggcttt
tcgatcgagaatttcagtaggcatggggaaacccttcatcaccatatagagcatcagctc
ttggatagctgtttgccagcaaaccaactccaaatcataaaacgcatgattgactatata
gacgcgaacggatacttgcaggaagaaaccgaaacaattgcacagcagctaagggttcca
actctacaggttgaacaggccatcatcaatattcaaagcctggagcctgcaggaatcgga
gcaagggatttaaaggaatgtctgctgcttcagctgagacgattaccaaagcgttcccat
ttggcagaaagaattctggaggaagacttcaccctttttgctgaaaaagcgtggaagacc
ttggcgaaaaaacatgaaatcagtttaaaggagattcaggaggtccatgatgaaatcgtg
aagctccatccacgaccggggaatctatatgaaacaacggaaaaaccaaggtatatcatt
cctgacttgattgtacaacagctgcatcaacagttcgtcgtttcgttgaatgaggagatc
gtgccccagattgcgatcaacgagaagtacaaatcaagtttctcttcacaaacagaagtg
gatgcctacctccaggaaaagctgcagcaatgtcaatggatcgtcaagagcatcgaacat
cgtaagcacacgctagttaaagtaatggaagagattgtatcggcacagctgtcctttttc
ctgaacgggcattccttcttgaagccgctgacactaaaagatattgcggagcgcctcaac
gtacatgagtcgacggtgagcagggcgacaaaggagaaatacgtgcagactccatttgga
ctgtttgaactgaaatactttttcagccagagcctgactggcagatttgatgaagagaaa
tcaaccaagcaggtgcagcagcttgtggaggaactggtaaaggcggaggataaacagaag
cctttgtctgatcaacagctgacaaacctgctccaaaagcagtatcatatagctatctca
agaaggacggtcgcgaaatatagggatttattgaacatcccgagctcctcgatgagaaaa
cgctacgattga
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