Bacillus haimaensis: ABN702_00840
Help
Entry
ABN702_00840 CDS
T10988
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bham Bacillus haimaensis
Pathway
bham03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bham00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABN702_00840 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bham03019
]
ABN702_00840 (rnr)
03016 Transfer RNA biogenesis [BR:
bham03016
]
ABN702_00840 (rnr)
Enzymes [BR:
bham01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABN702_00840 (rnr)
Messenger RNA biogenesis [BR:
bham03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABN702_00840 (rnr)
Transfer RNA biogenesis [BR:
bham03016
]
Prokaryotic type
tRNA degradation factors
ABN702_00840 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
DNA_ligase_A_M
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
XPD20779
LinkDB
All DBs
Position
179152..181524
Genome browser
AA seq
790 aa
AA seq
DB search
MEEIIQQHVDKLLSYMKEEAYKPLTTQELEEAFGIKDSEEFKNFVKALVHMEDQGLVVRT
RSNRYGLPEKMNLIKGKVIGHSKGFAFVMPEEGDMDDVFIPPTELNNAMHGDIVLVRINR
KANGDSRQEGTIIRIVERGVKEIVGTYTESKNFGFVIADDKKIANDIFIPKSATNGAVEG
HKVVVKLVTYPEGRLSAEGEVIRILGHKNDPGVDILSVIHKHGLPQEFPKEALDQANATP
DEIDEKDIGDRRDLRDQMIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTHYVTEG
SAIDMEAQERGTSVYLVDRVIPMIPHRLSNGICSLNPQVNRFTISCEMELNNAGEVVKHE
IFHSVIKTTERMTYTDVNKILVDKDEALIERYEPLVPMFQLMEELAAVLRKKRMLRGAID
FDFKESKVLVDEEGTPTDVVLRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRVHED
PKEEKLQRFFEFITNFGYVVKGKGNAIHPRALQEVIEAVQGKPEEMVVSTVMLRSMKQAK
YDEESLGHFGLSTEYYTHFTSPIRRYPDLIVHRLIRTYLIQKKIDQKTQEKWSEKLPEIA
EHSSNMERRAVDAERETDDLKKSEYMLDKIGEEYDGIISSVTNFGMFVELPNTIEGLVHV
SYLTDDYYRYDERHYAMIGERTGKVYRIGDEISIRVVNVNKDERSIDFEVVGMKGTRRPD
TKTAPRVIQSGDRKKPTKGRSQKRKQESDINDIEIGWSTQAPGGSSKKKNKKKQFFENAP
KQKRTKKKKR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaataattcagcagcatgtggataagcttttgtcctatatgaaagaagaggca
tataagccattgacgacccaggagctggaagaggcttttggaatcaaggattccgaggaa
ttcaagaattttgtgaaggctttggttcatatggaggaccaggggcttgttgtgcgtacg
agaagtaaccgttacggacttccggagaagatgaaccttattaagggtaaggtgatcggc
cattcgaagggctttgcgtttgtgatgcctgaggaaggggatatggatgatgtattcatt
ccgcctaccgagttgaataatgcgatgcatggggatattgttctggtccgaatcaatcgg
aaagcaaatggtgattcccgccaggaaggtaccatcattcgcattgtcgagcgtggagta
aaggaaatcgtcggtacatatacggaaagcaagaacttcggctttgtgattgcggatgat
aaaaagattgccaacgacattttcatcccgaaaagcgcaacgaacggagcggtagaaggt
cataaggtagtcgttaagcttgtgacgtatccggaagggcgtttaagtgccgagggagaa
gtaatccgaatccttggccataaaaatgatccgggtgtggacatcctttccgtcattcat
aagcatggcctgccgcaggagtttccgaaagaagcattggatcaggcaaatgcaacacct
gatgagattgacgaaaaggatatcggggaccgtcgtgacctgcgcgaccagatgatcgtg
acgattgatggtgcagatgcgaaagacctggatgacgcggttacggtgacgaaactggat
aacggcaactacaaacttggtgtgcatatcgcagacgttacacattatgtaactgaaggc
tcagcaatcgatatggaagcacaggagcgcgggacgagtgtgtatctcgtggaccgggta
atcccgatgattcctcaccgtctatccaatggaatttgctccttgaaccctcaggtgaat
cgatttacgatttcatgtgaaatggaattgaacaatgctggggaagtcgtcaaacacgaa
attttccacagtgtaatcaaaacaacggagcgtatgacttataccgatgtgaataaaatc
ctggtcgataaggatgaagcgctgattgagcgttatgaacctctggttccaatgttccag
ttgatggaagagctggctgctgtactgcgcaaaaagcgtatgctgcgcggtgccattgat
tttgattttaaagaatccaaggtcttggtggatgaagagggaactcctactgatgtcgtc
cttcgcgagcgttccgttgcggaaaagttgattgaggagttcatgctggtggccaatgaa
acggttgccgagcatttccactggatgaatgtgccgttcatctatcgtgtccatgaggat
ccgaaggaagaaaagctacagcgtttctttgaattcatcacaaacttcggctatgtggta
aaagggaaagggaatgcgatccacccacgtgcactacaagaggttatcgaagcagtacaa
ggaaagccggaggaaatggtcgtatctactgtcatgctccgttcgatgaagcaggcaaag
tatgatgaagagagtctgggtcactttggtctaagcaccgagtactatacgcacttcacc
tctccgattcgtcgctatccggacttgattgtccaccgtctgatccgaacgtatttgatt
caaaagaagatcgatcagaagacgcaggagaaatggagcgagaagctgccggaaatagcg
gagcattcttctaacatggagcgccgtgcagtagatgccgagcgtgaaacggatgatttg
aagaaatccgaatacatgcttgataaaatcggggaagagtatgatggaatcatcagctcc
gtcaccaacttcgggatgttcgtcgagcttccgaatacgattgaaggactggtccatgtc
agctatctgacggacgactattaccgctacgatgaacgccactatgcgatgatcggggaa
cgtacgggcaaggtgtaccgaatcggggatgagatctccatccgtgtcgtgaatgtgaat
aaggatgagcgttccatcgactttgaagtggtcgggatgaaaggaacccgccgtcctgat
acgaaaacggcaccaagggtcattcagagtggagaccgtaagaagccgacaaagggtcgc
agtcaaaagcgtaagcaagaaagcgacatcaatgatattgaaatcggttggagcacgcaa
gctcctggcggtagcagcaaaaagaagaacaaaaagaaacagttctttgagaatgcgcct
aagcaaaaacgtaccaagaagaaaaagagataa
DBGET
integrated database retrieval system
