Bacillus haimaensis: ABN702_12410
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Entry
ABN702_12410 CDS
T10988
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bham Bacillus haimaensis
Pathway
bham03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABN702_12410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bham03400
]
ABN702_12410
Enzymes [BR:
bham01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABN702_12410
DNA repair and recombination proteins [BR:
bham03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABN702_12410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
XPD18786
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Position
2445895..2447733
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AA seq
612 aa
AA seq
DB search
MFKPMLLSLHRDPPIGEDWVYEVKYDGFRCLAVLEKDSILLQSRNGKSLNNQFPEVVNFL
GNLLENKVIQQALPLILDGELAILTSSEKADFSSIQKRGRTKKTEKVEALAQSNPSTYLV
FDLLHFKNESLFDTPLFKRKEKLKNLFSTLQLPLSPTADSSSPIQYVPYHKEADTLWEKI
KLEDGEGMIAKKVNSFYRPGKRTNDWIKIKNYKIISCFITSYQKENGFFHVGLYKHSDIV
PIGLFSHGMSTDERQALLSVIKENSYKEDSQFIHVEPGICLDLLYLELYQGQLRHPEFHR
FRFDIQVKDCRIDNLQKADLNLPESVTVTHPEKPLWKDESVTKLDYLQYLKAVSPYILPF
LKNRLLTTIRFPHGMFGESFYQKNCPDYAPPFVETALEEGIQYIVCNNLETLLWLGNQLA
LEFHIPFQKVGDSSPCEIVFDLDPPSADYFSGAVKGALMMQKVFEQLDLHAFVKTSGRKG
LQVYLPLPEKTFTFEDTRIFTEFIAQYLVSTEPDIFTIERLKKRRGNKVYVDYIQHGEGK
TIISPYSLRGNTKPTVATPLFWTEVNTKLRPEFFTVFSVMERLKEKGDPFKGYLTIQAQQ
PFEQVLSFLKKV
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaccaatgcttttgagtttacaccgcgatcctccaatcggtgaagactgggtg
tatgaagtcaaatacgacggatttcggtgtctcgccgtccttgaaaaggatagtatcttg
ctacaaagcagaaatggaaagtcgttgaacaatcaatttcctgaagtggtgaacttcctg
ggaaacctactggaaaataaggttattcagcaggcgcttccattaattttagacggagaa
ttagccattctcacctcttctgagaaagccgatttttcttccattcaaaagcggggcaga
accaaaaaaacagaaaaagttgaagcactcgcccaatccaacccttcaacatatctggtc
ttcgatttgcttcattttaagaatgaatcactttttgatacccctttattcaaaagaaag
gaaaaactgaagaatctcttttccaccttacaactgccattatctccaactgctgacagc
tcctctcctatacaatatgtcccttaccataaagaagcagacactctttgggagaaaata
aagctggaggatggagaaggcatgattgctaagaaggttaacagtttttaccgaccaggc
aaacgaaccaatgactggatcaaaataaaaaactataagatcattagctgcttcatcact
tcctatcaaaaggaaaatggtttttttcatgttggactttataaacattccgacatcgtc
cctatcggtctattttcacatgggatgagtacagatgaacgccaggcgctattatcggta
atcaaagagaatagctataaagaggatagtcaattcatccatgtggagcctggaatttgt
ttagatcttttatatctggagctgtaccaaggtcaactacggcacccggaattccaccgc
ttcagatttgatatacaagtgaaggattgcagaattgataacctgcagaaagcggaccta
aaccttcctgaatcggttactgtcacccacccggagaaacctctttggaaggatgaatct
gttacaaaattagattatcttcaatatctaaaggcggtttcaccatacattctccctttt
ctgaaaaatcggctactgaccacaatccggtttccacatggaatgttcggtgagagcttt
taccaaaagaactgtccggattatgcccctccatttgtagaaacagctctggaggaaggc
atccaatatattgtatgcaacaatctcgaaacccttctatggcttggaaatcagctggct
ctggaattccacatcccttttcagaaagtaggagacagttctccttgtgaaattgtattt
gatttagaccctccgtccgcggattatttctctggagctgttaaaggcgcacttatgatg
caaaaggtatttgagcaactggaccttcatgcctttgtaaaaacttcaggcagaaagggg
ctgcaagtttatctccctcttccagaaaagacgttcacttttgaagacacaagaattttc
acggaatttatcgcacagtatcttgtaagcacagagcctgacatatttacgattgagcga
ttaaaaaagaggcggggaaacaaagtctatgtagattacatccaacatggagaaggaaaa
accatcatttccccttactctttaagaggaaatactaagccaacagtggccacacccctg
ttttggacggaagtgaatactaaactcagaccggagtttttcactgtctttagtgtaatg
gaacgtttgaaagaaaaaggagaccctttcaaaggctacctaacaatacaagctcagcaa
cccttcgaacaggttctctcctttttgaaaaaagtatag
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