Bartonella harrusi: NMK50_02065
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Entry
NMK50_02065 CDS
T08485
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhar
Bartonella harrusi
Pathway
bhar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMK50_02065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhar03021
]
NMK50_02065 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhar03400
]
NMK50_02065 (rpoC)
Enzymes [BR:
bhar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMK50_02065 (rpoC)
Transcription machinery [BR:
bhar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMK50_02065 (rpoC)
DNA repair and recombination proteins [BR:
bhar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMK50_02065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UTO28813
LinkDB
All DBs
Position
447918..452129
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIITEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELEKLANDLRVELSETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDIGELHHALE
NKVITLHTKIKGRVKNMGKDGKEISKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKLIDQVYRHCGQKETVIFCDRIMQLGFSYACRAGISFGKDDMVIPDSKLRLVTETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVLLEGGAMIEEADIAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGIVEIRNRN
VVRNSEGHLVVMGRNMAILIKDESGKERVVHRISYGAHIFVDDGDVVKRGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGADLKPAIIIHTDKK
GETIAKLYKGGEVRYMMSVETILSVEPGSHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDAALEPVEYLIPKGKLFHFQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIAGDNVDRIELDEINDNLIAEGKRPASGTPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATVRDDLIIDER
RKSSNNEMAKAMLTNMTTEAVAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaggcgccagcgcagacatttgactct
attcgtatttctatcgcgagccctgagaagattttgtcttggtcgtatggtgagatcaag
aagcctgagactattaattataggacttttaaaccagagcgtgatggtcttttttgtgca
cgtatctttggccctattaaggactatgaatgtctatgcggtaaatataaacgcatgaaa
tataagggcattatctgtgaaaaatgtggtgtagaggtgacgctttcgcgcgtacgtcgt
gagcgcatggggcatattgagcttgcggcacctgttgcgcatatttggttccttaaatca
ttaccaggtcgtatttctacacttttagatttaactttgaaagatattgagcgcgttctc
tattttgagaattatattataacggaaccaggattgacatcccttaagctccatcagctt
ctttctgaagaagagtatatgcttgctattgatgagtttggggaagatcagtttactgct
atgattggtgctgaagctatttatgagcttctagccagcatggaattagaaaaacttgcc
aatgatttgcgtgttgaattgtctgagacaacgtcagagttaaagcaaaaaaagctgatt
aaacggcttaagatcgttgaaaatttccttgaatctggcaataaaccagaatggatgatt
atgaagacgattccagtcattccacctgatttacgtccgttggttccactcgatggtggg
cgttttgcgacatcggatctcaatgatctttatcggcgtgtcataaaccgtaataatcgt
ttgaaacgattgattgaattgcgtgcccctggaattattgtccgcaatgaaaaacgtatg
gtgcaagaagctgttgatgcattgtttgataatggtcggcgtgggcgtgtgattacagga
gcaaataagcgtccactcaagtctctttccgatatgctaaagggaaagcaagggcgtttc
cgtcaaaacttgcttggaaagcgtgttgattattcaggacgttctgttatcgtaacgggc
cctgaattaaaattgcatcaatgtggtctccccaaaaagatggctcttgagttgtttaag
ccatttatttacgcacgacttgatgcgaaggggtattcatcaactgtaaaacaggcaaaa
aaacttgtagaaaaagagcatccggaagtatgggatatcttagatgaggttatccgtgaa
catcctgttttgttgaatcgtgcgccgacgttgcaccgtttgggaattcaggctttcgaa
cccatcttgattgaaggaaaagcgatacagcttcatccattggtgtgtactgcttttaat
gctgattttgatggcgatcagatggcggttcacgttccactttctcttgaagcacagctc
gaagcacgtgttttgatgatgtcgaccaataatattcttcatccagccaatggtgcacca
attattgttccctcacaggatatggttcttggcctctattatctttcgattgtttctgaa
aaagaaccaggtgaaggaatggctttttcggatataggcgagcttcatcacgccttggaa
aataaggttataactcttcacacgaagattaaaggccgcgttaaaaatatgggaaaggat
ggaaaagaaatttccaaactttacgatacaacgcctggacgtttgattattggggaactt
ttgccgaaaaatccaaatatctcatttgatattgtcaatcaagaaatgactaaaaagaat
atctctaaattgattgatcaggtttatcggcactgtggacaaaaagagacagttattttc
tgcgatcgtattatgcagcttggcttttcatatgcttgtcgtgcaggaatttcgttcggt
aaggatgatatggttatccctgatagcaaattgcgtttggttacagaaaccgaagcttta
gctaaagaatacgaacagcaatataatgacggtctcattacgcaaggtgagaaatataac
aaagtcgtagatgcgtggggtaaatgtacggatcgcgttgccgatgagatgatgaaacgt
attcaggcggttgaattcgatcctaaaacaggtcgtcagcggccaatgaattcaatctat
atgatgtcccattctggtgcgcgtggctctgctaaccagatgaagcagttagctggtatg
cgcgggttgatggcaaagccatcgggtgaaattattgaaacaccaattatttcaaacttt
aaggaaggtctaaccgttaacgaatacttcaattcgacgcacggagcacggaaagggctt
gccgatactgcgttaaaaacagccaattctggttatttaacacggcgcctcgttgatgtt
gcacaagatgctattatttcagcagttgattgtggtacggcaaaggggcttacgatgcag
cctattgttgatgcaggacaaattgttgcatctcttgggcaaaggattcttggtcgcaca
gcgcttgtcgatattttacatccagtttctggagaagttctccttgaaggtggtgcgatg
attgaagaagctgatattgctaagattgaagaagctggaattcagtctgtgcaaattcgc
tctgctttgacatgtgaaacacgccttggtgtttgtgctaaatgctatggtcgtgatttg
gcacgtggaacaccagtgaatcaaggtgaggcggttggtgttattgctgctcagtccatt
ggtgaaccgggaacacagcttactatgcggactttccacttaggaggaacggcgcaggtt
gtagattcgtctcatttagaagcctcctatgaaggtatagtagaaattcgcaatcgcaat
gtcgtgcgcaattctgaaggtcacttggtggttatggggcgtaatatggctatccttatt
aaggatgagtctggaaaagagcgtgtcgtgcatcgtattagctatggtgcgcatatcttt
gttgatgatggtgacgtagttaagcgtgggcaacgtatagcagaatgggacccttataca
cgtccaattttaactgaagttgaaggttatgtcggttttgaagatatgattgatggttta
tcagttactgaaacagctgatgaatctaccggtattacgaagcgtctggttattgattgg
cgtgctaatccccgtggtgctgatctgaaaccagctattatcatccacacagataaaaaa
ggtgaaaccattgcaaaactatataaggggggtgaagtccgttatatgatgtcagtagaa
actattctttctgttgagcctggttcccatgttaaggctggtgatgttattgctcgcttg
ccaatggaaagtgctaagacgaaagatattacgggtggtctaccacgtgtggctgagctt
tttgaagcacggcgtccgaaagaccatgctattattgctgaagtgagtggtacaattcgt
tttggtcgtggttataagaataaacgtcgtattatcattgaaccaaatgatgcagctctt
gaacctgtagaatatttgattccgaaaggtaaattgtttcacttccaagagggtgatcaa
attgaaaaaggggactatatcctcgatggtaatccagcccctcatgatattttggcgatt
aagggcgttgaggctttggcatcttatcttgttaatgaaattcaagaagtttatcgtttg
caaggtgttttaattaatgacaagcatattgaagtgattgtccgacagatgttgcaaaaa
gttgagattactgaatctggagattcaggctatattgcgggagataatgttgatcgtatt
gaacttgatgaaatcaatgataatttgattgcagaagggaaaaggcctgcatcgggtact
cccattcttcttggtattacgaaagcatctcttcaaacaccgtcgtttatttcggcagca
tcgtttcaggaaacaacaagagtccttactgaagcagcagtttctggtaaaattgatact
ttgcaaggtcttaaggagaatgttattgttggtcgccttattcctgcgggtacaggtggt
acgattgctcaaattcgccgtattgcaacagttcgtgatgatttgattatagatgagcgg
cgtaaatctagcaataacgagatggctaaggctatgttgacaaatatgacaactgaagca
gttgctgaataa
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integrated database retrieval system
