Candidatus Blochmanniella camponoti: M9394_02150
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Entry
M9394_02150 CDS
T08425
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bhb
Candidatus Blochmanniella camponoti
Pathway
bhb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9394_02150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhb03019
]
M9394_02150
03009 Ribosome biogenesis [BR:
bhb03009
]
M9394_02150
Enzymes [BR:
bhb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9394_02150
Messenger RNA biogenesis [BR:
bhb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9394_02150
Ribosome biogenesis [BR:
bhb03009
]
Prokaryotic type
rRNA helicases
M9394_02150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
URJ27350
UniProt:
A0AAE9I6U5
LinkDB
All DBs
Position
512493..514202
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AA seq
569 aa
AA seq
DB search
MSKTADSFIDLGLNRYIVNVLHDVGYEKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAF
VLPLLHNVDINNSCSQGLIVTPTRELAIQIGKVCSNFARYMKKINVVTLYGGQSYGIQLS
ALNKRPHIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFIEDVECIIKNIPVK
RQTALFSATLPMGIRRIGHRFMNNPKEVFIHSNTSMCANIIQSYWLVHSGIAKHDALMRF
LETEDFDAAIVFVRTKCATLEISEILERFGYNSAALNGDMNQTARHQTLDRLRHGKLDIL
IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGRMGKSLLFVEHKEYRLLRH
IERKINLKIPEVQYPTSKTLFDCRLSRFTNKVEYQLSIENDDLDIYRSLLSQIKPRRDLT
TENLAAVLLKIAQGNRPLVLPPDPIIKNKSVSKMRINSNRQNYFRVDNRVIKTRLQSKIS
DNMDAYHISVGRNDGVKIRHIIRVLSNNIVNIRYHEIGNIKLFSFHAIIELDKGLSSNKI
LTQLSHARILNKPINMKFLGSMSSCNEVH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactgcagactcttttatagatttaggattaaatcgttatattgtcaatgtt
ttacatgatgttgggtatgaaaaacctctacctattcaaatacaatgcattccatattta
ttagctggatatgatgtgttaggaatggcgcatacaggtagcggaaaaactgcggcattt
gttttaccattgttacataatgttgatattaacaattcttgttctcaaggtttaattgta
acgcctactcgagagttagcgatacaaattgggaaagtgtgttctaattttgcaagatat
atgaaaaaaataaatgttgttactttatatggagggcaaagttatggtattcaattaagt
gctttaaataagagacctcatattatagtaagtactcccggtagactaatagatcattta
aaccgtggcactgctaatttatctcaattaaaaactttagtgatagatgaagctgatgaa
atgttgcgtatgggatttattgaagatgtagagtgtatcattaaaaatattccagttaaa
cgtcaaacagcattattttctgctactttacctatgggtattcgtcgtataggtcatcga
tttatgaataatccaaaagaagtatttattcattctaatactagcatgtgtgccaatatt
atacaaagttattggttagtgcattcaggaattgctaaacatgacgctttaatgcgtttt
ttagaaacagaagattttgatgcagctattgtttttgttcgtactaaatgtgcaacgtta
gagatttccgaaatattagaaaggtttggttataatagtgcagctttgaatggagatatg
aatcaaacagcacgacaccagacattagatcgattaaggcatggcaaattagatattctt
atagctactgatgttgctgcgcgtggattagatgttcatcgtattagtttagtaataaat
tatgatataccaataaattctgatgcttatatacatcgtataggtagaactggtagagca
ggacgcatgggaaaatctttattatttgtagagcataaagaatatcgtttattgcgtcat
atcgaacgcaaaataaacttaaaaattccagaggttcagtatcctacctctaaaacttta
tttgattgtcgattatcgagatttacgaataaagtagaatatcaattaagtatcgagaat
gatgatttggatatatatcgatctctattgtcccaaataaaacccagacgagacttgaca
acggaaaatttagcagcagttttgctgaaaatagcgcaaggaaatcgtccattggtatta
cctccagatccgattattaaaaataaatcagtttctaaaatgcgtataaatagtaatcgt
caaaattattttcgtgtcgataatagagttattaaaactaggttgcaatctaaaatttct
gataatatggatgcttatcacatatcagtagggcgtaatgatggagttaaaatacgtcat
attattagagtactttcgaataatattgttaatattcgttatcacgaaataggtaatatt
aaattattttcttttcatgctattattgagttagacaaagggttatctagcaataaaata
ttaacgcagttgtctcatgcacgtattttaaataaaccaataaatatgaaatttttaggt
agtatgtcttcatgtaatgaagtacattga
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