Brachyspira hyodysenteriae ATCC 27164: BHYOB78_04530
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Entry
BHYOB78_04530 CDS
T04742
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bhd
Brachyspira hyodysenteriae ATCC 27164
Pathway
bhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHYOB78_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhd03019
]
BHYOB78_04530
03016 Transfer RNA biogenesis [BR:
bhd03016
]
BHYOB78_04530
Enzymes [BR:
bhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BHYOB78_04530
Messenger RNA biogenesis [BR:
bhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BHYOB78_04530
Transfer RNA biogenesis [BR:
bhd03016
]
Prokaryotic type
tRNA degradation factors
BHYOB78_04530
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RQC
Motif
Other DBs
NCBI-ProteinID:
AOS95161
UniProt:
A0A3B6VY72
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All DBs
Position
572815..574557
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AA seq
580 aa
AA seq
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MKTAEELIKKLMKNQMDYNIFIKFNSKTALEKTSLTNLIRKAISSGYIEKTAGNLLRVTK
EGRQYINKLEGKEEAPKTVKSVRINVDPKDAKSDSKIIAKSYNIKLDFSEELLKLAEEIN
NKADFTNIEADRVDLRNLKTITIDSESSKDLDDAFSIEKTDNNYKVYVHISDVSHFIEID
SPLDLEARARGNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFITDINNDGEILSSS
VCKSVIRSDRKLSYDYAEKLIKKEESDEDWLLELIDNALNIKNVLYKKRKEGRGVEFENQ
DIKIVLNDEGMPIEFYAEEKKESMAIIEELMLLANSKVAEKLSSYDGVIFLYHGLPDEYR
FNNFKILAHTKGYELKENPDKTYDIKGFIDNVKGKQEENLLIPVLLRSMTPSSYSIVNKS
HFGLGLDYYTYFTSPIRRYADLLIHRIVKDTILSNNNSINEKLKNICKDSIESLSLLDKT
SKKAEKYLIQIKAARYMKDRLGDEYYGAVSSITPKGIYVEIEGLEIEGFIEATYVGSNYR
FYQDMQSVYVDKVKAYELGDRVKVLVASSNVENGKIFFSL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgcagaagaattaataaaaaaattaatgaaaaatcaaatggattataatata
ttcataaaatttaattcaaaaacagctttggaaaaaacatcccttactaatttaataagg
aaagctataagcagcggatatatagaaaaaacagcaggtaatttacttcgcgtaacaaaa
gaaggcagacaatacattaataagttggaaggtaaagaggaagctccaaagactgtaaaa
tctgtaagaataaatgttgatcctaaagatgctaaatcagattctaaaattatagctaaa
tcttataatataaaattagatttcagtgaagagcttttaaaattagcagaagaaatcaat
aataaagctgattttacaaatatagaagctgacagagttgatttaagaaatttaaaaaca
atcactatagacagtgaaagttcaaaagatttggatgatgcttttagtatagaaaagaca
gataataattataaagtttatgttcatatttctgatgtaagtcattttatagagattgat
tctcctttagatttagaggctagagctagagggaattccacttatttgattgataaagtt
tataatatgtttcctgaagttctttctaataatataatttctttaaatgaaaatgaggat
agatttgctcttacttttatcactgatataaataatgatggtgaaatattatcttcatct
gtttgtaaaagtgttataagatcagacagaaaattatcttatgattatgctgaaaaactt
ataaaaaaagaagagtctgatgaggattggcttttagaattaattgataatgctttaaat
ataaaaaatgttttgtataaaaaaagaaaagagggcaggggagtagaatttgagaatcaa
gatattaaaatagttcttaatgatgaaggcatgcctatagagttttatgctgaagagaaa
aaagaatctatggcaataattgaggagttaatgcttcttgctaatagtaaagtagctgaa
aaattatcaagttatgacggcgttatattcctttatcatggacttcctgatgaatataga
ttcaataatttcaaaatacttgctcatactaaaggttatgaacttaaagaaaatccagat
aaaacttatgatataaaaggattcattgataatgtgaaaggaaaacaggaggaaaatttg
cttatacctgtacttcttcgttcaatgactccatcatcttacagcatagtaaataaaagt
cattttggattaggacttgattattatacttattttacttctcctataagaagatatgca
gatttacttattcatagaatagttaaagataccattttatcaaataataattctataaat
gaaaaattaaaaaatatatgtaaggattctattgaaagtttatctcttcttgataaaact
tcaaaaaaggctgaaaaatatcttattcagataaaagcagcaagatacatgaaagacaga
cttggagatgaatattatggggctgttagttctataactccaaagggtatatatgttgag
atagaaggtttagagatagaaggctttattgaggctacttatgttggttctaattataga
ttttatcaggatatgcaaagtgtttatgttgataaggttaaggcttatgagttgggtgat
agagtaaaagttttggttgcaagttctaatgttgaaaatggaaagatatttttctcttta
taa
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