Prevotella heparinolytica: C3V43_02075
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Entry
C3V43_02075 CDS
T05405
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bhf
Prevotella heparinolytica
Pathway
bhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V43_02075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhf03019
]
C3V43_02075
Enzymes [BR:
bhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V43_02075
Messenger RNA biogenesis [BR:
bhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V43_02075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Phage_integrase
Utp25_C
SUa-2TM
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVM56694
UniProt:
A0A2R3MPA5
LinkDB
All DBs
Position
complement(510920..512173)
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AA seq
417 aa
AA seq
DB search
MTFENLNLIQPILKALQEEGYSAPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPIL
QKLYKTDNRKRIKALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELKR
GVQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKLLPAQRQTL
FFSATMPPEIEALANSMLTQPEKVEVTPVSSTADKISQSVYFVEKKEKKDLLLHLLRSTE
IESVLIFTRTKYGADKLARILNKSGIKAEAIHGNKSQNARQRALTGFKSHSLRVLIATDI
ASRGIDVEQLSHVINYELPNIPETYVHRIGRTGRAGRNGVAVSFCESEELPYLRDIQKLI
GKKIHVIEDHPFITTHEVKTQDVPTQKAEIKEKKGKVQLERHSNNISRRRQRKPQNP
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatttaaatttgatacagcctatactgaaggctcttcaagaagagggg
tactccgcccctactcccatccaggagaaatcaatccccatattattacaaggaaaagac
ctattaggatgtgctcaaaccggaacaggaaaaactgctgctttttctattccaattctg
caaaagctatataaaacggataaccgtaaaagaatcaaagctttgattctgacgcctacc
cgcgaattggccatacaaatcggcgaaagtttcagcgcatacggcaagtacaccggttta
agacatgccgtcatttttggtggcgtgggacaaaagccacagactgacgaattgaaacgc
ggagtacaaatactgatcgcaacccccggacgcctgcaagacctcgtgaatcaaggattc
atcaacctcaagacacttgatttttttgttttggatgaggcagaccgcatgcttgacatg
ggattcatacatgatattcggcgcatcctgaaacttctacctgcccaacggcaaactctt
tttttctcggcaacgatgccacctgaaattgaggctttggcaaattccatgctgacacaa
ccggaaaaggtagaagtcactcctgtatcgtctaccgcagataagatatcacaatcagtc
tattttgttgagaagaaagagaaaaaagacctattgctccatttgttgagaagcacagag
atagaatctgtactcatttttaccagaaccaaatatggagcggacaaactcgcacgtatc
ctcaacaaatctggaataaaggcagaagctattcatggcaacaaatcccagaatgcccgt
caacgtgccttgacgggtttcaagagccatagcctgcgtgtattgatcgccactgacatc
gcgtcgcgcggaattgacgtagagcaattgtcacacgtcatcaattacgaactacccaac
attccggaaacgtacgtacatcgcattgggcgaaccggaagagccggacgtaacggcgtt
gccgtctcattctgtgaatcggaagaactcccctatctgagagacatccagaaactgatc
ggaaagaaaatccatgtaatagaagatcatcctttcatcacgacccatgaagtgaaaaca
caagatgtgccaacacaaaaagccgaaatcaaagagaagaagggtaaggtacaattagaa
aggcactccaataacatttcccgaagaagacaaaggaagccgcaaaacccgtag
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