Prevotella heparinolytica: C3V43_02460
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Entry
C3V43_02460 CDS
T05405
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bhf
Prevotella heparinolytica
Pathway
bhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V43_02460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhf03021
]
C3V43_02460
03019 Messenger RNA biogenesis [BR:
bhf03019
]
C3V43_02460
Transcription machinery [BR:
bhf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3V43_02460
Messenger RNA biogenesis [BR:
bhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3V43_02460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
NACHT
AAA_25
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
AVM56749
LinkDB
All DBs
Position
complement(604429..606459)
Genome browser
AA seq
676 aa
AA seq
DB search
MYNIIQLNDKNLSELQTIAQELGIKKTESLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKGDKRSRVTVKTVKKESVNKVFSANKNGELTKSKNEGTPIIKEQAKVAEAAPTTKPANT
AATEASKPANTVVATSPKNTESSSKRKPGRPRKTQEEADAASKATENAKVTEPELNFEPK
ATKTEPNKVAKNIVVDESPILSEAEDDFIPIEDLPTEKTELPSELIGKFEATKTEVPATP
APMPTEQQRPHLRSRDNNNNNRAGAYNQQRPMQQRPAQQHGGNENNPAAADNKPAVEREK
AYEFDDILTGTGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGVI
RPPKEGEKYFPLVKVSKINGRDPAFVRDRVPFEHLTPLFPDEKFKLCKGGYSDSLSARVV
DLFAPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMART
VNAEVIASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASG
KVLSGGVDANALHKPKRFFGAARNIEGGGSLTILATALIDTGSKMDEVIFEEFKGTGNME
LQLDRNLSNKRIFPAVNIVASSTRRDDLLQDKQTLDRMWILRKYLADMNPMEAMDFVKDR
LEKTKDNDEFLMSMNS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatcatccaactcaacgacaaaaacttgtcggaattgcaaactattgcccaa
gaactgggtataaaaaaaacagaatcattaaaaaaagaagagcttgtttacaagatactt
gacgaacaagccattgccggcgctactaaaaaggtagcagccgacaaactgaaagaagag
cgcaaaggagataaacgctctcgcgtaactgtaaaaacagtaaaaaaggaaagtgtaaac
aaagtattttctgctaataaaaacggagaactcaccaaatcaaaaaacgaaggaactccg
attatcaaagaacaagcgaaagtagccgaagcagcaccaacgaccaaaccagccaatact
gctgcgaccgaagcctccaaaccggccaataccgtagtcgccacctctcctaagaatacg
gaatcctcgtccaagcgtaaacccggacgcccccgtaaaacacaggaagaagccgatgca
gcctccaaagccacagagaatgcaaaagtaaccgaaccggaactgaacttcgagccaaag
gccacaaaaacagagccgaataaagtggcaaagaatatagtagtagacgaaagtcctatc
ttgtccgaagcagaagatgattttatccctattgaagacctcccgacagagaaaacagaa
cttccttccgaactcatcggcaaattcgaagccaccaaaacagaagttcccgcaactcct
gctcccatgcctacagagcaacaacgcccacaccttcgctccagagacaataacaataat
aatcgcgccggagcttacaaccagcagcgcccgatgcaacaacgtcccgcacaacaacat
ggcggcaatgagaataatccggcagcagcagacaacaaacccgcggtagaacgcgaaaaa
gcctacgaattcgacgacatcctcaccggaaccggtgttttggaaatcatgcaggatggc
tatggcttcttgcgctcttccgactacaactatctctcttcaccggatgacatctacgta
tcgcaatcgcaaatcaagttattcggtttgaaaaccggcgatgtggtggaaggcgtaatt
cgtcctcccaaagaaggtgaaaaatatttccctctggtcaaagtgtccaaaataaacgga
cgcgacccggctttcgtgcgcgaccgcgttccgtttgaacacctcactccgcttttcccg
gacgagaaattcaaactttgcaaaggcggatattccgattccttgtctgcccgtgtagtc
gacctctttgccccgataggtaaaggtcagcgtgccttgattgtggcacagcccaaaacc
ggtaagaccatcttgatgaaagacatcgccaacgccatagcagccaatcatcctgaagtc
tatatgataatgctgctcattgacgaacgtccggaagaagtgaccgacatggcacgtacg
gtcaatgcggaagtgattgcctctaccttcgacgaaccggcggaacgccacgtaaagata
gccggaattgttcttgaaaaggcaaaacgcatggtagaatgcggacacgacgttgtcatc
ttcctcgactccatcacccgtctggcccgtgcatacaacaccgtgtctccggcctccgga
aaagtgctgtcgggtggtgtagatgccaatgcactgcacaaacccaaacgtttcttcggt
gcggcacgtaacattgaagggggcggttcgttgacgatactggccaccgccctgattgat
accggctccaagatggacgaagtaatcttcgaagaattcaagggtacgggtaatatggaa
ttacaactcgaccgcaatttgtccaacaaacgtattttcccggctgtcaacattgttgcc
tccagcacccgtcgcgacgacttgctgcaagacaaacaaacgctggatcgcatgtggatt
cttcgcaaataccttgccgatatgaatcctatggaagcgatggatttcgtgaaagaccgt
ctggagaaaaccaaagacaacgacgaatttctgatgagcatgaacagctaa
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