Prevotella heparinolytica: C3V43_08630
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Entry
C3V43_08630 CDS
T05405
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bhf
Prevotella heparinolytica
Pathway
bhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V43_08630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhf03019
]
C3V43_08630
03009 Ribosome biogenesis [BR:
bhf03009
]
C3V43_08630
Enzymes [BR:
bhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V43_08630
Messenger RNA biogenesis [BR:
bhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V43_08630
Ribosome biogenesis [BR:
bhf03009
]
Prokaryotic type
rRNA helicases
C3V43_08630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVM57815
LinkDB
All DBs
Position
complement(2104970..2106961)
Genome browser
AA seq
663 aa
AA seq
DB search
MKTFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKIDVNQQIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIESQIRALK
RGVHIIVATPGRLLDLMERKTVSLATIRNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLHNAKEITIGRKNEGTSNVKHVVFCVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMRAIEHI
IAKKFEQGEMPTADQICEKQLLKVIDDLEKVKVNEEEIEAFMPDVYRKLDWLSKEDLIKR
MVSHEFNKFLDYYRDREDIAAATGNERGAKGGERGARGERRGGNGGNRQLEAGYKRLFIN
LGKMDNFFPGELIGLLNKNTRGRIELGRIDLMQKFSFFEVEEKEAAGVVKALNRANWNGR
KVSVEIAGEENGNDAPRSGRHKNDGENGSRGKKERGGKKEYADKKQGHKDGRQGDAPAVR
RKEKNENAASAKKNKPSREERGYTKARGKKDDWKQFFQGYDDFKDPEPDFSEEGWAKRSK
KKK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagctcggtgtgtcggcggagatacgccgtgccattgaagagatg
ggatatgcgtgtcccatgccggtacaagaggaagtgattccttaccttttaggagaaaac
aatgacgtagtggcgctggcacaaaccggaacaggaaagactgccgcattcggcctgccg
cttatacagaagattgacgtaaaccaacagattccccaatccctcatcctttgccccacc
cgtgagctttgcctccagatagcgggcgacctgaacgattactccaaatacatcgacggc
ctgcgcgtattgcctgtatacggcggttcgtccatcgagagccagatacgcgccctgaaa
cggggagtacacatcatcgttgccacaccgggacgactgctcgacctgatggagcgcaaa
accgtatccctcgccactatccggaacgtagtgatggacgaggccgacgagatgctgaac
atgggtttcaccgacagcatcaacgccattctggccgacgtgccccaagagcgcaacaca
ttgctgttctctgccaccatgagtccggagatagcacgcatctcgaagaactacctgcat
aacgccaaggaaatcaccatcggacgtaagaatgagggtacgagcaacgtgaagcacgtg
gttttctgcgtccatgccaaagacaaatacgccgcactgaagcgcatcgtcgattattac
ccgcagatatacggcatcatcttctgccgcacccgcaaggagacgcaggagattgccgac
aaactgatgcaggagggctacaatgccgactccctgcacggcgaactgagccaggcgcag
agagacgccgtgatgcagaagttccgcatccgcaacctgcaactgctggttgccaccgat
gtggctgcccgtggtctggatgtggacgacctgacccatgtcatcaactatgggctgccg
gatgacaccgagagctacacccaccgcagcggtcgcaccggacgtgccggaaagacagga
acctccatcgccatcatcaacttgcgcgaaaaggggaagatgcgcgccatagagcacatc
atcgccaagaagttcgaacagggagaaatgcccactgccgaccaaatatgcgaaaagcag
ttgctgaaggtaatcgacgatttggaaaaggtgaaagtgaacgaagaagaaatagaggct
ttcatgcccgacgtctatcgcaagctggactggctgagcaaggaagacctgataaagcgg
atggtttcgcatgagttcaacaagtttctcgattactatcgcgaccgcgaagatatcgca
gcggccactggcaatgaacggggtgcgaaaggcggagaacgcggtgcacgcggcgagcgt
cgcgggggaaatggcggcaaccgtcagctcgaagcaggctacaaacgcctgtttatcaat
ttaggcaagatggacaacttctttcccggcgaactcatcggcctgctgaacaagaatact
cgcggacgcatcgagctgggtcgcatcgacctgatgcagaagttttctttcttcgaggta
gaagaaaaagaggccgccggcgtggtgaaagccttgaaccgtgccaactggaacggacgc
aaggtgtcggtcgagattgccggcgaagagaacggcaacgacgctccgagaagcggcagg
cacaaaaacgacggcgaaaacggaagccgtggcaagaaagagcgaggcgggaaaaaggaa
tatgccgacaagaagcaggggcataaggacggcaggcagggcgatgccccggcagtccgc
cgcaaagagaagaacgaaaacgccgcatccgccaagaagaacaagcccagccgcgaagaa
cggggctacaccaaagcccgtggcaagaaggacgactggaagcagttcttccaaggctac
gatgacttcaaagaccccgaacccgatttcagcgaggagggatgggccaaacggagcaag
aagaagaaatga
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