Bacteroides heparinolyticus: C3V43_12465
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Entry
C3V43_12465 CDS
T05405
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bhf
Bacteroides heparinolyticus
Pathway
bhf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3V43_12465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhf03400
]
C3V43_12465
DNA repair and recombination proteins [BR:
bhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3V43_12465
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C3V43_12465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_21
SMC_N
UvrA_DNA-bind
AAA_16
AAA_29
nSTAND1
DnaJ_CXXCXGXG
nSTAND3
AAA_22
AAA_33
RsgA_GTPase
SLFN-g3_helicase
NACHT
Viral_helicase1
cobW
BamE
Motif
Other DBs
NCBI-ProteinID:
AVM58471
LinkDB
All DBs
Position
3134355..3137150
Genome browser
AA seq
931 aa
AA seq
DB search
MAEGTSISIKGARVNNLKNIDVEIPRNRLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SSYARQFLGRMSKPECDFIKGIPPAIAIEQKVSSRNPRSTVGTSTEIYEYLRLLYARIGK
TFSPVSGQEVKKHSTEDIVRCMKEHPEGTRYTVLAPVVLREDRNMQQQLEVDMKQGFTRL
EVNGEMVRIDEYKPKTGDTVFLLIDRMTVSAEKDAVSRLTDSAETAMYEGDGACLLRFYQ
PDGTTCLYRFSTKFEADGITFEEPNDQMFSFNSPVGACPVCEGFGKVVGIDEHLVIPNRA
LSVYDGAVVCWRGEVMGEWRDMVIRGAEKAGFPIFSPYYELTDEQRRMLWEGTPYFEGIN
AFFKMVQENQYKIQYRVMLARYRGKTICPKCHGTRLKPEANYVRVGGRSISELVDLPITE
LKFFFDKLKLEPHDADVARRLLTEINNRIRFLLDVGLGYLTLNRLSNSLSGGESQRINLA
TSLGSSLVGSLYILDEPSIGLHSRDTDKLIGVLRQLQQLGNTVVVVEHDEEIIRAADYII
DIGPKAGRLGGEVVYQGDMKDLKKGSNSYTVRYLLGEETIPTPAQRRPWNNYIEIKGARE
NNLKGVDARFPLNVMTVVTGVSGSGKSTLVRDIFYRALKRELDECNERPGEFISIGGDLR
NLSNVEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAEQPLAKQMGHSAGHFSFNSEGGRC
EECKGEGTITVEMQFMADLVLECESCHGKRFKADTLEVKFHDVNIYDVLNMTINQAIEFF
TKYGQKKIVKKLQPLQDVGLGYIKLGQSSSTLSGGENQRVKLAYYLSQEKADPTLFIFDE
PTTGLHFHDIKKLLEAFDALIRRGHSIVIIEHNLDVVKCADYVIDLGPEGGDKGGNIVAE
GTPEEVARCAASYTGQFLQEKLQEDRQKRTK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaggtacatcaatttctataaaaggggcgcgtgtcaataacctgaagaatata
gacgtggaaatcccgcgcaaccggttggtcgtcatcaccggattgtccggatcgggcaaa
tcatcactcgctttcgacacactgtatgccgaagggcaacgccgctacgtagagagcctg
agcagctacgcccgtcagtttctgggacgcatgagcaagcccgaatgcgacttcatcaaa
ggcataccgcccgccatcgccatcgagcaaaaagtcagcagccgcaatccccgctccact
gtaggcacttcgaccgaaatatacgaatacctgcggttgctctacgcacggataggaaaa
acattcagccccgtcagcggacaggaagtgaagaaacattccaccgaagacatcgtgcga
tgtatgaaggagcatcccgaaggtacgagatacaccgtgcttgcccccgtggtgctgcgc
gaagaccgcaatatgcagcaacaattggaggtggacatgaagcagggcttcacccggctg
gaagtgaatggcgaaatggtgcgcatagacgaatacaagccgaaaaccggtgacaccgtg
tttctgctgatagaccgtatgactgtttctgccgaaaaagatgccgtgagccgtctgacc
gactcggccgagacagccatgtacgaaggagacggcgcctgcctgctgcgattttaccag
cccgacggcacaacctgcctctatcgcttcagcaccaagttcgaagccgacggcatcacc
tttgaagagccgaacgaccagatgttctccttcaactcgcccgtaggcgcctgcccggta
tgcgaaggattcggcaaggtagtaggcatagacgaacatctggtaatacccaaccgcgcc
ctatccgtctacgacggggctgtggtgtgctggcgaggcgaggtgatgggcgaatggcgg
gatatggtgatacgcggagccgagaaagccggtttccccatcttcagtccctactacgag
ctgaccgacgaacagcgccggatgctttgggagggtacgccctacttcgaaggaatcaac
gctttcttcaagatggtgcaggagaaccaatataagatacaatatcgggtaatgctggca
cgatatcgtggcaagacaatttgtcccaagtgccacggcacccgcctgaaacccgaagcc
aactacgtgcgggtgggcggacgcagcatctcggaattagtggatttgcccatcacggag
ctgaagttctttttcgacaagctgaaacttgaaccacacgatgccgacgtggcacgccgc
ctgctgacggagataaacaaccgtatccgcttcctgctcgacgtaggtctgggctatctc
acgctaaaccgcctgagcaattcgctttccggaggcgaaagccagcgcatcaaccttgcc
acttcgctgggcagcagtctggtgggcagcctttatatcctcgacgagccgagcatcggc
ctgcacagccgcgacaccgacaagctgatcggcgtgttgcgccaattgcaacagttaggc
aatacggtcgtcgtagtggaacatgacgaagaaatcatccgtgcggcggattacatcatc
gacatcggtcccaaagcaggacgtctgggaggcgaagtggtctatcagggcgacatgaaa
gaccttaaaaaaggaagcaacagctacaccgtgcgttacctgctgggcgaggaaaccata
ccgacacccgcacaacgccgcccgtggaacaactatatcgaaataaaaggagcacgcgaa
aacaacctgaaaggggtggacgcacgtttccccttgaatgtgatgaccgtggtgaccggc
gtcagcggttcgggcaagagcacactggtgcgtgatatcttctatcgcgccctgaagcgc
gaactggacgaatgcaacgaacgtccgggggaatttatttccatcggtggcgacctccgg
aacctgagcaacgtggagtttgtcgaccagaatcccatcgggaaatcatcgcgaagcaac
ccggtgacatacatcaaggcctacgacgaaatccgcaaattgtgggcggagcagccgctc
gccaaacaaatgggtcacagtgccggacatttcagcttcaacagcgaaggaggacgctgc
gaggaatgcaagggcgaaggaactatcacggtggagatgcaattcatggccgaccttgtg
ctggaatgcgaatcgtgccacggtaaacgcttcaaagccgacacgctggaagtgaaattt
catgacgtcaacatctacgacgtgctgaacatgaccatcaaccaagccatcgaattcttc
acaaagtacgggcagaagaaaatcgtaaagaagcttcagcctcttcaagatgtgggtttg
ggatatatcaaattgggacaatcgtcatccacgctttcgggcggcgagaaccagcgtgtg
aagctggcctattacctcagtcaggagaaagccgaccccaccctgtttatctttgacgag
cctaccaccggcctgcacttccacgacatcaagaaactgctcgaagcattcgacgcactg
atacgtcgcggacactccatcgtaatcatagagcacaacctcgacgtggtgaagtgtgcc
gattatgtgatagacctcggcccggaaggaggagataagggcggtaacatagtggcagag
ggcacaccggaagaggtggcccgatgtgcggcaagctacaccggacagtttctgcaagag
aaactgcaagaagaccggcagaagaggacgaagtga
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