Burkholderia humptydooensis FDAARGOS_899: I6G56_09875
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Entry
I6G56_09875 CDS
T08266
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bhg
Burkholderia humptydooensis FDAARGOS_899
Pathway
bhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G56_09875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhg03019
]
I6G56_09875 (rnr)
03016 Transfer RNA biogenesis [BR:
bhg03016
]
I6G56_09875 (rnr)
Enzymes [BR:
bhg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6G56_09875 (rnr)
Messenger RNA biogenesis [BR:
bhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6G56_09875 (rnr)
Transfer RNA biogenesis [BR:
bhg03016
]
Prokaryotic type
tRNA degradation factors
I6G56_09875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
RNase_II_C_S1
WHD_RNase_R
CSD
PF0610-like_N
Phage_TAC_18
RcsD_ABL
Motif
Other DBs
NCBI-ProteinID:
QPS45332
UniProt:
A0A7U4P7D1
LinkDB
All DBs
Position
1:1861021..1863456
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AA seq
811 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDTPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVAEVLGDIDDPGMEIEIAVRKYGVPHEFGAAALGEATALPDKV
RPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPVAVGRGEGFRLIVAIADVSHYVQPG
SPLDVDAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIKAYQ
FYPAVIHSAARLTYTEVAAVLANTKGPEAARRAELMPHLQNLYGVYKALFAARQKRGAID
FDTTETYIVCNTQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSMQQAVY
SPENIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGRKYTPKSPEGVELNTALSPR
ARAMQREEDEARGRARSNAAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRETPVKAPRPAASAAAAESGGPRVRALSPAEGPARRKKAASA
PSAAVKEARAARKKGAASKPAAKKAHSRKKY
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtatccgtatcccatcccgagccgcgaagagattctcggcgtgctgcgcacg
agcgacacgccgcttgccgcgaatgatatcgccgaagcgctgtcgatcaagcgtcaggag
cgcgaaggatttttccgtcgcgtcgccgcgatggagcgcgacggccagatccgtctcgac
aagcgcggccattatcagttgacgcatccgtccaacttcgtcgcgggccgcgtgcaaggc
catcgcgacggctacggcttcgtgatccgcgacgatggccaggacgacctgttcctgccg
aacgccgaaatgcagaaggtcatgcacaacgatcgcgtgctcgcgcggatcgtcggctat
gaccggcgcgggcggccggaagggcacgtcgtcgaggtgaccgagcgcgcgaacaagcgc
gtgatcgggcgtctgctgaacgagaacggcgcgctcatcgtcgcgcccgaggacaagcgg
atcagccacgacatcctcgtcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagcttaccgatttcccgagccgtcattcgcagccgctcggccgcgtcgccgag
gtgctcggcgacatcgacgatcccggcatggagatcgagatcgcggtgcgcaagtacggc
gtgccgcacgaattcggcgcggcggcgctcggcgaggccacggcgctgccggacaaggtg
cggcccgcggatctgcgctatcgcgtcgacctgcgcgacgtgccgctcgtcacgatcgac
ggcgaggacgcgcgcgacttcgacgacgccgtgtactgcgagcccgtcgcggtcggccgc
ggcgagggcttccggctcatcgtcgcgatcgcggacgtgtcgcactacgtgcagcccggc
agcccgctcgacgtcgacgcggtcgagcgcagcacgtcggtctatttcccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacgggctctgctcgctgaatccgcaggtcgac
cgctgcgtgctcgcgtgcgacatgatcatcaacgcgcgcggcgacatcaaggcataccag
ttctatccggccgtgatccattcggccgcgcggctcacgtataccgaagtggccgcggtg
ctcgcgaacacgaaggggccggaggccgcgcgccgcgccgagctgatgccgcacctgcag
aacctgtacggcgtctacaaggcgctcttcgccgcgcggcagaagcgcggcgcgatcgat
ttcgatacgaccgagacgtacatcgtctgcaatacgcaaggcaagatcgagcagatcctg
ccgcgccagcgcaacgacgcgcatcggctgatcgaggaatgcatgcttgccgcgaacgtg
tgcgcggccgatttcctcaagcgcaacaagcacccgggcctctaccgcgtgcacgcgggc
ccgacgcccgagaagctcgagaacctgcgcgcgttcctgcgcgacatggggctcacgctg
ggcggcggcgacacgccgcatgcgagcgactacgcggcgctgatggcgcacatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggcggtctac
agcccggaaaacatcggtcacttcggcctcgcgtacgacgcgtatgcgcacttcacgagc
ccgatccgccgctatcccgatctgctcacgcatcgcgcgatctacgcgatcctgtccggc
aggaagtacacgccgaagtcgccggaaggcgtcgagctgaacaccgcgctgtcgccgcgc
gcgcgcgcgatgcagcgcgaggaagacgaggcgcgcgggcgcgcgcggtcgaacgcggcg
atctgggaggagctcgggcttcactgctcggcgaacgagcggcgcgcggatgaagcgtcg
cgcgacgtcgaggcgtggctcaagtgctatttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgatgcgctcttc
atcgaaggcctcgtgcacgtgacagagctcggcgccgactacttccagtacgacgaggtc
aagaacgagttgcgcggcgagcgcacgggcatccgctaccggttgtccgatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgatttccgcctcgtgcgcgag
acgcccgtgaaggcgccgcgtccggcggcgtcggcggccgcggccgaatcgggcgggccg
cgcgtgcgtgcgctgtcgcccgccgaagggcctgcgcggcgcaagaaggccgcgagcgcg
ccgagcgcggcggtgaaggaagcgcgggccgcccgcaagaagggcgccgcatcgaagccg
gccgcgaagaaggcgcattcgcgcaagaagtactga
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