Burkholderia humptydooensis FDAARGOS_899: I6G56_12050
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Entry
I6G56_12050 CDS
T08266
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bhg
Burkholderia humptydooensis FDAARGOS_899
Pathway
bhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G56_12050 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhg03021
]
I6G56_12050 (rho)
03019 Messenger RNA biogenesis [BR:
bhg03019
]
I6G56_12050 (rho)
Transcription machinery [BR:
bhg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I6G56_12050 (rho)
Messenger RNA biogenesis [BR:
bhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I6G56_12050 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPS42356
UniProt:
A0A7U4P401
LinkDB
All DBs
Position
1:2362224..2363486
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AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLWLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtctctgcacgtctccgaattgatcgaaatggccaatggc
ctcgagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgttcgccattctcaaa
aagcgcgccaagacgggagaaacgatcttcggcgacggcacgctcgaagtgctgcccgac
ggcttcggcttcctgcgctcgcctgaaatgtcgtacctcgcgagcacggatgacatctat
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacacgatcgaaggcgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctcgtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtggctcgagcgcgagatgcgcggcgaggagaacgtgacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgctccagcacatcgcgcacgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgagcgccccgaagaagtgaccgaaatgcag
cgctcggtggcgggcgaagtgatcgcgtcgacgttcgacgaaccggccacgcgccacgtg
caggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtcgagatgaagcacgacgtc
gtgatcctgctcgattcgatcacccgcctcgcgcgcgcgtacaacaccgtgatcccggcg
tcgggcaaggtgctgacgggcggcgtcgacgcgaacgcgctgcagcgcccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctcacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcacgggcaac
atggaggtgcacctcgagcgccgtctcgcggaaaagcgcgtgtatccgtcgatcaacctg
aacaagtcgggcacgcgccgcgaggaaatgctgatcaagcccgagatccttcagaagatc
tgggtgctgcgcaagttcatccatgacatggacgaagtcgaggcgatggaattcctgctc
gacaagatccgccagacgaagaacaacgccgagttcttcgatctgatgcgccgcggcggc
tga
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