Burkholderia humptydooensis FDAARGOS_899: I6G56_12690
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Entry
I6G56_12690 CDS
T08266
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhg
Burkholderia humptydooensis FDAARGOS_899
Pathway
bhg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G56_12690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhg03400
]
I6G56_12690 (mfd)
Enzymes [BR:
bhg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G56_12690 (mfd)
DNA repair and recombination proteins [BR:
bhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G56_12690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPS42474
UniProt:
A0A7T2TZ11
LinkDB
All DBs
Position
1:2491370..2494939
Genome browser
AA seq
1189 aa
AA seq
DB search
MKSKDGFYNTSFAAMSRAELVRHPASANQPLAMSDNASPSQSPIALVKAGQRFAFDGAHG
SADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRVLPDWETLPYDT
FSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFTQGERLDEAK
LKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQ
RSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRSPIYKDIGNGVPSAGIEYY
LPLFFDETATLFHYLPERAQLVFAGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLF
LSDDDFYLLAKPFARLVLPAQPAGGWAAPLPNLALDRHADAPLAAFVAYLETTKNRVLFT
VESAGRRETIAQLFAEHHLRPAGSDSFAAWLESDERFALGVAPLASGFAVPGEGYAIVTE
TELYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGE
TEFLHLEYASDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTA
AELLNLYARRAAREGHAFALDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRL
VCGDVGFGKTEVALRAAFIAVLGGKQVALLSPTTLLAEQHTQTFIDRFADWPVKIVELSR
FKSTKEVNTAIQQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKAL
RAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRSEDESVIREAMLRE
LKRGGQVYFLHNEVETIENRRAMLEALVPEARIAIAHGQMHERELERVMRDFVAQRANVL
LCTTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQ
AQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKA
LKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHGDSIDGIQEE
LIDRFGKLPPQAHALVETHRLRLAAKPLGIVKIDASEAAIGLQFVPNPPIDPMRIIDMVQ
KHRHIKLAGQDKLRIETRTPDLAVRVSTVKETLRALGQPQQSRAQAAAR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgaaagacggattttataatacgtctttcgccgcgatgagccgcgccgagctc
gtccgccatccggcgtccgccaaccagccgctcgctatgtcagacaacgcctccccttcg
cagtcccccatcgcgctcgtcaaggcgggccaacgcttcgcattcgacggtgcgcacggc
tccgccgacgcgctcgtcatcgcccgctatctcgctgcgcaccgcgcgcaggtgccgctt
ctcgccgtgatctgcgcgaacgcggtcgacgcgcagcggctcgcgcaggaactgcgctac
ttcgcgcccgacgcgcgcgtgcgcgtgctgcccgactgggagacgctgccgtacgacaca
ttctcgccgcaccaggatctcgtgtccgagcggctcgcgacgctgcacgacctgggcgaa
ggccgctgcgacatcctgctcgtgccagcgacgacggcgctctaccgaatgccgcccgcg
tcgttcctcgccgcgtacacattctcgttcacacagggcgagcggctcgacgaagcgaag
ctgaaggcgcaactgacgctcgccggctacgagcacgtgagccaggtcgtgcggcccggc
gaatactgcgtgcgcggctcgctgatcgacctgttcccgatgggctctccgctgccgtac
cggatcgatctgttcgacgaccaggtcgactcgatccgcgcgttcgatccggacacgcag
cgcagcctctacccggtgcgcgacgtgcgcctcctgcccggccgcgagttcccgttcgac
gaggccgcgcgcaccgcgttcagaagccgctggcgcgagaccttcgaaggcgacccgagc
cgctcgccgatctataaggacatcggcaacggcgtgccgtcggccggcatcgaatactac
ctgccgctcttcttcgacgagacggcgacgctcttccactatctgcccgagcgcgcgcag
ctcgtgttcgcgggcgatctcgacgcggcgatcaagcgcttcacggccgacacgaagcag
cgctacgcgttcctgtcgcacgaccgcgagcggccgatcctcgagccgcagcgcctgttc
ctgtccgacgacgacttctatctgctcgcgaagccgttcgcgcggctcgtgctgcccgcg
cagccggcgggcggctgggccgcgccgctgccgaacctcgcgctcgaccgccacgcggac
gcgccgctcgccgcattcgtcgcgtatctggaaacgacgaagaaccgcgtgctcttcacc
gtcgaatccgcgggccgccgcgagacgatcgcgcaattgttcgccgagcaccatctgcgc
cccgcgggcagcgacagcttcgccgcgtggctcgagagcgacgagcgcttcgcgctcggc
gtcgcgcccctcgcgagcggcttcgcggtgccgggcgaaggttacgcgatcgtcaccgag
accgagctgtacggcgcgctcggccgccgcgcgggacgccgccgccaggagcaggcgagc
aacgtcgacgcgatggtgcgtgacctgtccgagctgaaggtgggcgacccggtcgttcac
gcgcagcacggcatcggccgctacatggggctcgtgtcgatggatctcggcgaaggcgag
accgagttcctgcatctcgaatacgcgagcgacagcaagctgtacgtgcccgtcgcgcaa
ctgcacgtgatctcgcgctacagcggcgcggacccggacagcgcgccgctgcacgcgctc
ggctccggccagtgggagcgcgcgaagcgccgcgccgcgcagcagatccgcgacaccgcg
gccgagctgctgaacctctatgcgcgccgcgcggcgcgcgagggccacgcgttcgcgctc
gatccgcgcgactacgtgaagttcgccgacagcttcggcttcgaggaaacgcccgaccag
gccgccgcgatcgcggccgtgatcggcgacatgacgagcggcaagccgatggaccgcctc
gtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgcggcgttcatcgcg
gtgctgggcggcaagcaggtcgcgctgctgtcgccgaccacgctgctcgccgagcagcac
acgcagaccttcatcgaccgcttcgccgattggcccgtgaagatcgtcgagctgtcgcgc
ttcaagtcgacgaaggaagtgaacacggcgatccagcagatcaacgaaggcagcgtcgac
atcgtgatcggcacgcacaagctgctgtcgtcggacgtgcagttcaagcggctcggcctc
gtgatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaagcgctgaaggcgctg
cgcgcggaagtggacgtgctcacgctgaccgcgacgccgatcccgcgcacgctcggcatg
gcgctcgagggcctgcgcgacttctcggtgatcgcgaccgcgccgcagaagcggctcgcg
atcaagaccttcgtgcgcagcgaggacgagagcgtgatccgcgaggcgatgctgcgcgag
ttgaagcgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgc
cgcgcgatgctcgaggcgctggtgcccgaggcgcgcatcgcgatcgcgcacggccagatg
cacgagcgcgagctcgagcgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctg
ctgtgcacgacgatcatcgagaccggcatcgacgtgccgagcgcgaacaccatcatcatg
caccgcgcggacaagttcggcctcgcgcagttgcaccagttgcgcgggcgcgtcggccgc
tcgcaccaccaggcgtacgcatacctgctcgtgcacgatccgcaggcgctcacgaagcag
gcgcagcggcggctcgaggcgatccagcagatggaggagctcggctcgggcttctacctc
gcgatgcacgacctcgagatccgcggcacgggcgaggtgctcggcgacaagcagtcgggc
gagatccacgagatcggcttccagctctacaccgagatgctgaacgacgcggtgaaggcg
ctgaagaacggcaaggagccggacctcaccgcgccgctcgccgcgacgaccgagatcaac
ctgcacgcgcccgcgatcctgcccgccgactattgcggcgacgtgcaggagcggctgtcg
ctgtacaagcggctcgcgaactgcgagcacggcgattcgatcgacggcatccaggaagag
ctgatcgaccgcttcggcaagctgccgccgcaggcgcacgcgctcgtcgagacgcaccgg
ctgcggctcgccgcgaagccgctcggcatcgtgaagatcgacgcgagcgaagcggcgatc
gggctgcagttcgtgccgaatccgccgatcgatccgatgcgcatcatcgacatggtgcag
aagcaccggcacatcaagctcgcgggccaggacaagctgcggatcgagacgcgcacgccg
gacctcgcggtgcgcgtgtcgacggtgaaggagacgctgcgcgcgctcggccagcctcag
cagtcgcgcgcgcaggcggcggcacgatag
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integrated database retrieval system
