Burkholderia humptydooensis FDAARGOS_899: I6G56_19070
Help
Entry
I6G56_19070 CDS
T08266
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhg
Burkholderia humptydooensis FDAARGOS_899
Pathway
bhg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6G56_19070 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhg03021
]
I6G56_19070 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhg03400
]
I6G56_19070 (rpoC)
Enzymes [BR:
bhg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6G56_19070 (rpoC)
Transcription machinery [BR:
bhg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6G56_19070 (rpoC)
DNA repair and recombination proteins [BR:
bhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6G56_19070 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QPS43618
UniProt:
A0A7U4P1E3
LinkDB
All DBs
Position
1:complement(3859085..3863323)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQEEIFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDTSEGAPEFVPKISLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPTQKEQIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYESGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GIVRFTSTMRYVTNAKGEQIVISRSGEAMITDDIGRERERHKVPYGATLLQLDGASIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEQ
SDRERFDQIAAEEAFEFGTPGTPAEEPQHPAE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaaatttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggcgaagtgaagaag
ccggagacgatcaactaccgcacgttcaagcccgagcgcgacggtctgttctgcgcgaag
atcttcggcccgaccaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgtgag
cggatgggccacatcgagctcgcgtcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtttgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcttacgtggtgatcgatccgggcatgacgccgctgaaggcgcgtcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgttcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaaaatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcgttccagcgctcgggcatcaagcccgactggatgatcctcgaa
gtgctgccggtgctgccgccggagctgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggatctgaacgacctgtaccgccgcgtgatcaaccggaacaatcggctgaag
cgtctgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcaatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgtttccgtcag
aacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctggaagtgatgggggtagctacgaccatcaaggcggcgaagaaggag
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgcgcgccgacgctgcaccgtctcggcatccaggcgttcgagcccgtg
ctgatcgaaggcaaggcgatccagttgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggcgaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctcacgttcaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaagtcgagctcgcatcgcgcgtgaacgtgcggatcaccgaaatggtccgcaacgaggac
acgtccgaaggcgcgccggaattcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgctcgatcctgtcggaaatcctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggcctgcgc
gcgaccgtcgtgttcgccgaccagttgatgcagtcgggcttccgtctcgcgacgcgcgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgacgcagaaggaacagatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcaactgtcgacggagccggtgatcgatcgcgacggcaacgagacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggctcggcggtg
cagattcgccagttggccggtatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggcgcgcgtaagggtctggctgatacggcactgaagaccgcgaactcgggttat
ctgacgcgtcgtctcgtcgacgtcacgcaggatctggtggtggtcgaggacgattgcggc
acgagcaacggcgtcgcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgcgatcgtatcctcggccgcgtcgcggttgcggacgtcgtgaatccggaaacgcaggaa
acgctgtacgaatcgggcacgctgctcgacgaaacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgttatggcctgtgc
gcatcgtgctacggccgcgacctcggccgcggctcgctcgtgaacgtcggcgaagcagtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagttgacgatgcgtacgttc
cacatcggtggtgcggcgtcgcgtgcggcggtggcttcgtcggtcgaagcgaagagcaac
ggtatcgtgcgcttcacgtccacgatgcgctacgtgaccaacgcgaagggtgagcagatc
gtcatttcccgttcgggtgaagcgatgatcaccgacgacatcggccgcgagcgcgagcgt
cacaaggtgccgtacggcgcgacgctgctgcagctcgacggcgcaagcatcaaggcaggc
acgcaactcgccacgtgggacccgctgacgcgcccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgccaagcagatcgacgacgtgacc
ggcctgtcgacgctcgtcgtgatcgacgtgaagcggcgcggctcgcaggcgtcgaagagc
gttcgtccgcaggtgaagctgctcgatgcgaacggcgaggaagtgaagatccccggcacg
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaggcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcaccggcacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaatcagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgatgcccaggttgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcaggggatcgaggcgctgtcgcgctatatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgccgcgtgcagatcgtcgacaacggcgacacgcgcttc
attccgggcgagcaggtcgagcgttcggacatgctggacgagaacgaccgcatgatcgcg
gaagacaagcgcccggcgacgtacgagaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgag
gcggcgatcatgggcaagcgcgacgacctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggagcaa
tccgatcgcgagcgcttcgaccagatcgcagcggaagaagcgttcgagttcggcacgccg
ggcacgcccgccgaagagccgcagcacccggcggagtaa
DBGET
integrated database retrieval system
