Benincasa hispida (wax gourd): 120066983
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Entry
120066983 CDS
T07258
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120066983
03036 Chromosome and associated proteins [BR:
bhj03036
]
120066983
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
120066983
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120066983
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
120066983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
Helicase_RecD
DEAD
AAA
Mov-10_helical
ATPase_2
AAA_5
TRAPPC13_N
AAA_7
Motif
Other DBs
NCBI-GeneID:
120066983
NCBI-ProteinID:
XP_038874250
LinkDB
All DBs
Position
12:54753920..54758895
Genome browser
AA seq
882 aa
AA seq
DB search
MGTVGDNWGDDFSIIRDKGEISYIDYEDDKSVCSYNPIEEGPIIVSVPFAFVNGKPQSVF
VGETVADMITIKNTTDESVDLWSVNIYASNPENSFTLSLMEPPGPNADIESVQAFLESFS
LEDRMIHPDETLTVWLSCKPKEIGLHTTIVHFDLGNERIERVSFLLADDKISQSLASRKP
YSRDRRKRHEAVDSYIPGSRPVRTRGKGFKNFLLQYEIPSRIRDELSRKEIPSAVREGLK
RDTYISYFMTLLNMEEIQLEEDMRAYDMEHVSMRRKGHNFLSLEVPGLAERRPSLVHGDY
ILAKTPFDSVSAYQGYIHHVEADEVFLKFAPEFHINHRDDNLYNVQFTYNRINMRRFYQA
VDAAESLAKEFLFPYDFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGP
PGTGKTQTLVEAILQLYTTRKNARILVCAASNSAADHILEKLLSQEGVEIRENDVFRLNA
STRQYEEIKADHLRYCFFDEHIFRCPPRNALVRYRIVVSTYMSTSLLYAEDIKRGHFSHI
FLDEAGQASEPESIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFE
CEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSLLTDIADIRQVLPN
KEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQV
LKIRKALDSLDMIDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRF
NVAVTRAISLLVIIGNPHIINQDVYWNKLLWQCVDKDSYQGCPLPERQDPTYEEQPCNNE
EGQSSGFEEAGQNQEPLEPALAPKTEFSEPVVDEAEWSDGWK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggttggtgataattggggagacgatttttctatcatcagagacaaaggagag
atttcctatattgactacgaagatgataaatctgtttgcagttataatcctattgaggaa
ggtccaattattgtttcagtgccttttgcttttgtgaatggcaaacctcaatcagttttc
gtcggagaaacagtggctgatatgattaccatcaagaacaccaccgatgaatctgtggat
ctatggtccgttaatatttatgcatccaatcccgaaaactcgtttacactttctctaatg
gagcccccaggtccaaatgctgacatagaaagtgtacaagctttcttggagtctttttca
ttggaggatagaatgatccatccggatgagactcttactgtatggctgtcttgcaagcca
aaggaaattggcttgcacacgaccattgtgcattttgatcttggcaatgaaagaatagaa
cgagtgtcttttcttttagcagatgataagatttcacagtcgttggcttctaggaagcca
tattcaagagataggagaaagaggcatgaggcagtagattcgtatattcctggctcacgt
cctgttagaacacgaggtaagggattcaaaaatttccttctccaatatgaaatccctagt
agaattagagatgaacttagcagaaaggagattcctagtgctgttcgagaaggacttaaa
agagatacctacatttcctatttcatgacattgttgaacatggaagaaatacaactagag
gaagacatgagagcttatgatatggagcacgtttctatgagaagaaagggacataacttt
ttgtccctcgaggttcctgggctcgctgagagaaggccttcacttgtccatggagattat
atccttgccaagacgccttttgactcagtttctgcttatcaggggtatattcatcacgtt
gaagctgatgaagttttcctaaaatttgctcctgaatttcacattaaccacagagatgac
aatttgtataatgtccagtttacctataacagaattaacatgagaaggttctatcaggct
gttgatgctgcagaaagtttggcaaaggagtttctgttcccatacgatttttcagaaaga
agatatatcaagactactccgctggtgcctataactcagaacatcaatgaggaacagatg
cgttgtgttcagatgatcctcggttgcagaggagcgccaccttatttagttcatggacct
cctggtaccggtaagactcaaaccttggtggaagcgatcctacaactctatacgacacga
aagaatgctcggatactcgtttgtgctgcttcaaatagtgctgcagaccacatactggag
aagctcctcagtcaggagggtgttgaaattcgtgaaaatgatgttttcaggctaaatgca
agcacgcggcaatacgaggaaatcaaggctgaccaccttcgctactgcttctttgatgaa
cacattttcaggtgtcctccccgcaatgctctagtgcgctataggattgttgtttcaact
tatatgagtacttcccttctttatgctgaggatatcaagcggggtcacttctctcacatt
ttcttggatgaggctggccaagcttcagaaccagaatccataattcctatatccaacctc
tgtctaaggaaaacagttgtcgttcttgctggtgatcccatgcaattaggtcccgtgatt
tactccaaagaagcagaaatttatggattgggtaaatcatatttggaaaggctttttgaa
tgtgagtattacagcactggggatgaaaactatgtaataaagttgttaagaaactataga
tgtcatccagatatcttgcatcttccttctacattgttctatgggggtgaactaattgca
tgtaaagatgagaaaagtctcctcacggatatagcagatattcgtcaagtacttcctaat
aaagagtttcctgttcttttctttggtatccaaggttgtgatgagcgggaaggcaacaac
ccgtcatggtttaaccgaattgaggttagcaaggtggttgagattataaggaaactgact
gatggtggaaatctgagcgaggaaaatatcggggtcataacaccctatcgacaacaagtg
ctcaaaataaggaaagcccttgatagcctggatatgattgatataaaggttggtagtgta
gaacaatttcaaggacaagagaggcaagtgattattgtttctactgttcgatcaacgatc
aaacataatgagtttgacagaacatactgtttagggtttttgagtaatccaagaaggttt
aatgtggctgttacccgggctatatctcttctggtcataattggcaatccccatataatc
aatcaggatgtctattggaacaagctgttatggcagtgtgttgacaaagattcatatcaa
ggttgccccctccccgaaaggcaggatcccacatatgaggaacaaccctgcaataatgaa
gagggacaaagttcaggatttgaagaagcaggccagaatcaagagccgctggagccggca
ctggcaccaaagacggaattttctgaaccagttgttgatgaagctgaatggtctgatggg
tggaagtaa
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