Benincasa hispida (wax gourd): 120067305
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Entry
120067305 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120067305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120067305
03041 Spliceosome [BR:
bhj03041
]
120067305
03009 Ribosome biogenesis [BR:
bhj03009
]
120067305
03016 Transfer RNA biogenesis [BR:
bhj03016
]
120067305
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120067305
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120067305
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120067305
Complex C
U4/U6.U5 tri-SnRNP related factors
120067305
Ribosome biogenesis [BR:
bhj03009
]
Eukaryotic type
Pre-60S particles
Helicases
120067305
Transfer RNA biogenesis [BR:
bhj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120067305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120067305
NCBI-ProteinID:
XP_038874774
LinkDB
All DBs
Position
12:complement(65917981..65929124)
Genome browser
AA seq
994 aa
AA seq
DB search
MGSSKRKQVENPPRQPSPKQHRTNGPAIVEDEPVACIHDVSYPEGSFNPLPSSSLSSTAE
KLEPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPSGGEGLYLVVDEKGHFREDSFQKALNALVPVSDGDKKRENNGKWQK
SLTLGKTGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKTMLKGNADCLNSAFHLSYNMLLNQIRSEDGNPENLLRNSFYQFQADRNIPNL
EKQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLVS
IECNSNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYSVDVLTRCIVSKD
GIGKKNVKIVRLKEHGEPHVVSIPISQISTLASIRILIPNDLLPLEARENTLKKISEVLS
RFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSTLVEQKLKALHLKQEL
TAKIRSIKKTLRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSANELTL
SELMFNGVFKDIKVEEVVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLE
CKVEIDVEGFVNSFRPDIMEAVYGWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLI
LAAKSIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaacaggtcgaaaatccgcctagacaaccttcgccgaagcaa
catagaaccaatggccctgccattgttgaagacgaaccagttgcgtgtatccatgatgtc
tcctaccccgagggttcttttaatcctctcccatcttcaagtctctcttcgactgcagag
aagttggaaccggctaaggttttccctttctctctggacccctttcagtctgaggctatc
aagtgcttggaaactggagaatctgtcatggtgtctgcccatacatcagctggtaaaact
gtcgtagcattgtatgcaattgccatgtctcttcggaataaacagcgtgtcatatacacc
tcaccaatcaaggccctcagcaaccaaaaatatagggaatttaaagaagaattctcggat
gttggtttaatgactggggatgtgacaattgatccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatcagaggttacacgggaagtggcatgg
attatttttgatgaagtacattacatgcgtgatcgggagcgaggtgttgtttgggaagag
agcattgtcatggctccaaaaaatgctcgatttgttttcctctcagcaactgttccaaat
gcaaaagaatttgctgattgggttgcgaaggtccaccaacaaccatgtcatattgtttat
actgactatcggccaacacctcttcaacactatattttcccatctggtggtgaaggctta
tacttggtggttgatgaaaaggggcattttcgtgaggatagctttcaaaaagctttaaat
gcacttgtccctgttagtgatggcgacaagaaaagggagaataatgggaagtggcagaag
agtttgactttgggcaaaacaggtgaagagagtgatatatttaagatggtgaagatgata
attcagcgtcaatatgatcctgttatacttttcagctttagcaaaagagaatgtgaattt
cttgcaatgcagatggcaaaattggatctaaatggtgatgatgaaaaggtaaacatagaa
accatcttttggagtgctatggatatgctttcggatgatgataagaagctccctcaggtt
tcaaatatgttgccactcttgaagcgtggaattggggtccaccattctggcttgctccct
attttgaaggaagtaattgagatattatttcaagaagggctaatcaagtgtttgtttgcc
acagagaccttcagcattggtttaaacatgcctgcaaaaactgttgtgttcagtaatgtc
cgtaagttcgatggggataaatttagatggttatcaagtggtgaatatatacaaatgagt
ggtcgagctggacggagaggaattgatgaacgagggatatgtatcctgatggtggatgag
aagctggaaccttcaactgctaaaacgatgcttaaaggaaatgcggattgcttgaacagt
gcttttcacttgagctataacatgctcctgaatcaaatccgttctgaagacggcaatcct
gaaaatctgctgcgtaattccttctatcagttccaagccgaccgcaacatacccaacctc
gagaaacaagtgaaaagccttgaagaggagagggattccatagtgattgaagaggaagat
aatttgaagaattattatgatttgctaaagcagtacaaaagtttaaagaaggatattcgt
gatattgtgttgtctcctagatactgcttaccatttctgcaacctggcaggcttgtatct
attgaatgcaacagcaatgatgaaatctcttcaaccttttccattaaggaccaggttacg
tggggattgataattaattttcaaagggtgaaaggtgtttctgaagaggatgctagcatg
aaaccagaatctgcaaactactctgtggacgttcttacaagatgcattgtcagtaaagat
ggcattgggaaaaagaatgttaagatcgttcgattgaaagagcacggagaaccccatgtt
gtttccattccaatatctcagatcagtactttagctagtattcgtatactcataccgaat
gatcttttgccgttggaagctcgagaaaatacattgaagaagatttctgaagttctatca
agatttccaaagggagtgccccttttagatccagaagaggatatgaaaattcaaagtagc
tcatacagaaaggcggtgcgtagaacagaggctttggagagcctctttgacaagcatgag
gtggcaaaatcaacacttgttgagcagaagctcaaagcattacatttaaagcaagagtta
acagctaaaattagatcaattaagaaaacattgcgttcttcttctgcattggctttcaaa
gatgaactgaaggccaggaaacgagtattgcggaggcttggttacatcacaagtgatgat
gtcgtggaactcaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattgaccctt
tcagagctgatgttcaatggggttttcaaggacataaaagtggaggaagttgtcgctctg
ctatcttgtttcgtgtggcaagagaaacttcaggatgcagctaagcctagggaagagctt
gagctgctcttcattcaattacaagacacagctcgaagggttgctaaggttcagcttgaa
tgcaaggtcgaaattgatgtagaaggctttgtgaattcatttagaccggatattatggag
gctgtatatggttgggcaaaaggatccaaattctatgagataatggaaataacacaggtt
tttgaggggagcttgattagagcaattagaagactggaggaagttcttcaacaacttata
cttgcagcaaagtccattggtgaaactgaacttgaaaccaagtttgaagaggctgtttct
aaaatcaagagggatattgtctttgctgcttctctgtacttgtag
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