Benincasa hispida (wax gourd): 120070737
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Entry
120070737 CDS
T07258
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120070737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120070737
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120070737
mRNA cycle factors
Common to processing body (P body) and stress granule
120070737
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
120070737
NCBI-ProteinID:
XP_038878538
LinkDB
All DBs
Position
2:39086179..39093859
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AA seq
979 aa
AA seq
DB search
MAKMSASASSSWERAQRLYEKNIELENRRRRSAQARVPSDPNAWQQMRENYEAIILEDYA
FSEQHNIEYALWQLHYKRIEELRGHYTAAINPTGSNNSQGVPTRPDRVSKIRLQFKTFLS
EATGFYHDLILKIRAKYGLPLGFFSEDADNRMATDKDGKKSSDMKKGLISCHRCLIYLGD
LARYKGLYGEGDSKNREYTAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAVYRYF
RSLAVDSPFSTARENLIVAFEKNRQSHFQLSATAKPPLKKESPIRFSGKGRKGEVKLATK
DSSTEPPKESVLSPQDPFKSFCIRFVRLNGILFTRTSLETFTEVLSLVNSSFSELLASGP
EEELLFGTDAAENSLIIVRIVAILIFTVHNVNKETEGQTYSEIVQRAVLIQNAHIAVFEL
MGSILDRCSQLRDPLSSFFLPGLLVLIEWLACCPEIAANSEVDDKQATARSKFWNLCISF
FNKLLSSGSVSLDDDGDETCFFNLSKYEEGETENRLALWEDLELRGFLPLLPAQTILDFS
RKHSGSDGNKEKVARIKRILAAGKALANVVKIDQEPIYYNSKVKRFCTGVEPQVPNDFVI
PSSSSMIPSPGSAIQETQVEKTNNLAVGKPSSQLVLEGEEEDEVIVFKPLVAEKRIEIAD
SLRSGYEGLQLGSNSSGGDLRSYGGVTTSSDDVYQSNGFESSSQAPVTAANINTLHWQTI
QANASKWPLEQEACLVDSLQSLRLLENGHGMKSDFQNDISMFNHAAHSMPIKQAVSINND
VFYSDKKPIGTLVQSRNDVAASFGGIIDPMTTGAFSSLQTGLRKSPVGRPVRHLGPPPGF
NHVPTKHANESLPGSEFRSENQIMDDYSWLDGYQLPSSTKDSANAVHLTSHMNAQQVGVS
NMLSATISFPFPGKQVPNVQSPIGKQKGWPDFQVLEQLKQHNEQHLQPHQQLVNGGSQLF
NSLPEQYPGQSIWTGRYFM
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggctaagatgtctgcttccgcttcttcatcgtgggagcgtgctcaacgcctttatgaa
aagaatatcgagttggaaaatcgacgtagaaggtcggctcaggctcgagttccttcagat
cccaatgcatggcaacaaatgcgtgagaattatgaggcaataatcctcgaggattatgct
ttttctgaacagcacaatattgagtatgctctatggcagttgcattacaagcgaattgag
gagttgaggggacactatactgctgctataaatcctactggttctaacaattctcaaggg
gtgcctacaaggcctgacagagtttcaaaaataagattgcagttcaaaacttttctttcc
gaagctactggattttaccatgatttaatattgaaaatcagagcaaaatatgggctccct
ttgggttttttctcggaggatgcagacaaccgtatggctacagataaagatggaaagaag
tcttctgacatgaagaaaggtctcatttcttgtcatcgttgtttgatatacttgggtgat
cttgctcgctacaaagggttatatggggaaggcgattcaaaaaatcgggagtatactgca
gcttcaagttattacctgcaagcagcatcactttggccatcgagtggcaatcctcatcat
cagcttgctattttagcttcatactcaggagatgagttggttgctgtttatcgatatttc
cgtagtttggctgttgattctccattttctactgccagagagaatttgattgttgcgttt
gagaagaaccgtcagagccattttcagctgtcagcgactgctaaacctcctctgaagaag
gaatcacctattcgatttagtggaaaaggacggaagggagaagtaaagcttgcaactaaa
gattctagtactgaacccccaaaggagagtgtgttatctccacaagatccttttaaatcc
ttttgcattagatttgttcgtctaaatggaattcttttcacacgcacaagcctagagacc
tttacagaggtactatcattagttaatagtagtttctccgaacttttggcttctggacct
gaagaggaactgctttttggaacggatgctgctgagaacagtctcatcatagttagaatt
gttgcaattcttatattcacggttcacaatgtgaataaagaaactgaagggcagacgtac
tcagaaattgtacaacgggctgtgttgattcagaatgcacatattgcagtctttgagttg
atgggctctattctagacagatgttcccagttgcgtgatcctttatcaagtttttttctg
cctggccttctagttcttattgaatggttggcctgttgcccagaaattgcagcaaacagt
gaagtggatgataaacaggcaactgctagatcaaaattttggaacctttgcatctccttc
ttcaataagcttttgtcaagtggttctgtgtccttagatgatgatggagatgaaacttgc
ttttttaacctcagtaaatatgaagagggcgaaactgaaaatcggcttgcattgtgggag
gatcttgaattaaggggattcttgccacttcttcctgcacagacgatattggatttttca
aggaagcattctggaagtgatggcaataaagagaaggttgctcgcattaaaaggattttg
gctgcagggaaggctttagcaaacgtagtcaagattgatcaagaaccgatatactacaat
tcaaaggtgaaaaggttttgcaccggtgttgaacctcaagtgccaaatgatttcgtcatt
ccatcgtcttctagcatgattcctagtccaggtagtgcaattcaagaaactcaagtcgag
aaaacaaacaatttggcagttggtaagccaagttcccagctagttttggaaggggaagag
gaggatgaagtaattgtcttcaagcctctagttgctgagaagcgaattgaaattgctgat
tcactgcggtcaggttatgagggtttgcaacttggaagtaactcatctggaggtgatctg
agatcctatggtggtgtgacaacctcttctgatgatgtttaccagtcaaatggttttgag
tcaagttctcaagcacctgttactgctgctaatattaacactctccactggcaaacgatt
caggcgaatgcttccaaatggccacttgaacaggaagcttgccttgttgatagcttgcaa
agtttgaggttattggagaatgggcatgggatgaaatctgattttcagaatgatataagc
atgtttaatcatgctgctcactcgatgcctatcaagcaagctgttagcataaataatgat
gttttttacagtgacaaaaagcccataggaactcttgtgcaatctaggaatgatgttgct
gcctcgtttggaggcattattgacccaatgactacaggtgcattttctagccttcaaaca
gggttgagaaaaagcccagttggtcgaccagttaggcatcttggacctcctcctggattc
aaccacgttccaactaagcatgctaatgaatcccttcctggttcagagtttagaagtgag
aatcagatcatggatgattatagctggttagatggatatcagctgccctcttctacaaaa
gactctgctaatgctgtgcatctcacctctcatatgaatgctcagcaagttggtgttagt
aatatgttgagtgcaacaatcagcttcccttttcctggaaaacaagttccaaatgtgcag
tctccaataggaaaacagaaaggctggcctgattttcaagtgcttgagcagctaaaacaa
cacaatgaacaacatctgcagccacatcaacagcttgtgaatggtggtagccaactcttt
aattcgctgcctgagcaatatccaggacagtctatatggacaggtcgttacttcatgtga
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